Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:08 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the iBMQ package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/iBMQ.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 890/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
iBMQ 1.32.0 (landing page) Greg Imholte
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | WARNINGS | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | ... NOT SUPPORTED ... | ||||||||||||
Package: iBMQ |
Version: 1.32.0 |
Command: rm -rf iBMQ.buildbin-libdir && mkdir iBMQ.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=iBMQ.buildbin-libdir iBMQ_1.32.0.tar.gz |
StartedAt: 2021-10-15 09:51:53 -0400 (Fri, 15 Oct 2021) |
EndedAt: 2021-10-15 09:53:22 -0400 (Fri, 15 Oct 2021) |
EllapsedTime: 88.8 seconds |
RetCode: 0 |
Status: OK |
PackageFile: iBMQ_1.32.0.zip |
PackageFileSize: 2.669 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf iBMQ.buildbin-libdir && mkdir iBMQ.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=iBMQ.buildbin-libdir iBMQ_1.32.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'iBMQ' ... ** using staged installation ********************************************** WARNING: this package has a configure script It probably needs manual configuration ********************************************** ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I/src/include -I/i386/include -fopenmp -I"c:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c ARS.c -o ARS.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I/src/include -I/i386/include -fopenmp -I"c:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c RngStream.c -o RngStream.o RngStream.c: In function 'RngStream_CreateStream': RngStream.c:321:7: warning: 'strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] strncpy (g->name, name, len + 1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ RngStream.c:319:13: note: length computed here len = strlen (name); ^~~~~~~~~~~~~ "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I/src/include -I/i386/include -fopenmp -I"c:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c iBMQ_common.c -o iBMQ_common.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I/src/include -I/i386/include -fopenmp -I"c:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c main_parallel_sparse.c -o main_parallel_sparse.o main_parallel_sparse.c: In function 'iBMQ_main': main_parallel_sparse.c:289:3: warning: 'Cfile' may be used uninitialized in this function [-Wmaybe-uninitialized] fclose(Cfile); ^~~~~~~~~~~~~ main_parallel_sparse.c:288:3: warning: 'Sig2file' may be used uninitialized in this function [-Wmaybe-uninitialized] fclose(Sig2file); ^~~~~~~~~~~~~~~~ main_parallel_sparse.c:287:3: warning: 'Mufile' may be used uninitialized in this function [-Wmaybe-uninitialized] fclose(Mufile); ^~~~~~~~~~~~~~ main_parallel_sparse.c:285:3: warning: 'Bfile' may be used uninitialized in this function [-Wmaybe-uninitialized] fclose(Bfile); ^~~~~~~~~~~~~ main_parallel_sparse.c:284:3: warning: 'Afile' may be used uninitialized in this function [-Wmaybe-uninitialized] fclose(Afile); ^~~~~~~~~~~~~ main_parallel_sparse.c:286:3: warning: 'Pfile' may be used uninitialized in this function [-Wmaybe-uninitialized] fclose(Pfile); ^~~~~~~~~~~~~ "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I/src/include -I/i386/include -fopenmp -I"c:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c main_parallel_sparse_constC.c -o main_parallel_sparse_constC.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I/src/include -I/i386/include -fopenmp -I"c:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c norm_gamma_generation.c -o norm_gamma_generation.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I/src/include -I/i386/include -fopenmp -I"c:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c sparse.c -o sparse.o C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o iBMQ.dll tmp.def ARS.o RngStream.o iBMQ_common.o main_parallel_sparse.o main_parallel_sparse_constC.o norm_gamma_generation.o sparse.o -L/i386/lib -lgsl -lgslcblas -lm -fopenmp -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/iBMQ.buildbin-libdir/00LOCK-iBMQ/00new/iBMQ/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'iBMQ' finding HTML links ... done PPA.liver html calculateThreshold html eqtlClassifier html eqtlFinder html eqtlMcmc html gene html genepos html genotype.liver html hotspotFinder html iBMQ-package html map.liver html phenotype.liver html probe.liver html snp html snppos html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'iBMQ' ... ********************************************** WARNING: this package has a configure script It probably needs manual configuration ********************************************** ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I/src/include -I/x64/include -fopenmp -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c ARS.c -o ARS.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I/src/include -I/x64/include -fopenmp -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c RngStream.c -o RngStream.o RngStream.c: In function 'RngStream_CreateStream': RngStream.c:321:7: warning: 'strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] strncpy (g->name, name, len + 1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ RngStream.c:319:13: note: length computed here len = strlen (name); ^~~~~~~~~~~~~ "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I/src/include -I/x64/include -fopenmp -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c iBMQ_common.c -o iBMQ_common.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I/src/include -I/x64/include -fopenmp -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c main_parallel_sparse.c -o main_parallel_sparse.o main_parallel_sparse.c: In function 'iBMQ_main': main_parallel_sparse.c:289:3: warning: 'Cfile' may be used uninitialized in this function [-Wmaybe-uninitialized] fclose(Cfile); ^~~~~~~~~~~~~ main_parallel_sparse.c:288:3: warning: 'Sig2file' may be used uninitialized in this function [-Wmaybe-uninitialized] fclose(Sig2file); ^~~~~~~~~~~~~~~~ main_parallel_sparse.c:287:3: warning: 'Mufile' may be used uninitialized in this function [-Wmaybe-uninitialized] fclose(Mufile); ^~~~~~~~~~~~~~ main_parallel_sparse.c:285:3: warning: 'Bfile' may be used uninitialized in this function [-Wmaybe-uninitialized] fclose(Bfile); ^~~~~~~~~~~~~ main_parallel_sparse.c:284:3: warning: 'Afile' may be used uninitialized in this function [-Wmaybe-uninitialized] fclose(Afile); ^~~~~~~~~~~~~ main_parallel_sparse.c:286:3: warning: 'Pfile' may be used uninitialized in this function [-Wmaybe-uninitialized] fclose(Pfile); ^~~~~~~~~~~~~ "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I/src/include -I/x64/include -fopenmp -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c main_parallel_sparse_constC.c -o main_parallel_sparse_constC.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I/src/include -I/x64/include -fopenmp -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c norm_gamma_generation.c -o norm_gamma_generation.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I/src/include -I/x64/include -fopenmp -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c sparse.c -o sparse.o C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o iBMQ.dll tmp.def ARS.o RngStream.o iBMQ_common.o main_parallel_sparse.o main_parallel_sparse_constC.o norm_gamma_generation.o sparse.o -L/x64/lib -lgsl -lgslcblas -lm -fopenmp -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/iBMQ.buildbin-libdir/iBMQ/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'iBMQ' as iBMQ_1.32.0.zip * DONE (iBMQ)