Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:05:41 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the genoCN package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/genoCN.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 733/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
genoCN 1.44.0 (landing page) Wei Sun
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | WARNINGS | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: genoCN |
Version: 1.44.0 |
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL genoCN |
StartedAt: 2021-10-14 06:02:32 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 06:02:42 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 10.4 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL genoCN ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’ * installing *source* package ‘genoCN’ ... ** using staged installation ** libs gcc -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c tnorm_mle.c -o tnorm_mle.o gcc -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c utility.c -o utility.o utility.c: In function ‘readfile’: utility.c:155:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 155 | fscanf(file,"%s",temp); | ^~~~~~~~~~~~~~~~~~~~~~ gcc -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c xCNV.c -o xCNV.o xCNV.c: In function ‘emiss’: xCNV.c:317:25: warning: unused variable ‘k’ [-Wunused-variable] 317 | int L, N, M, K, i, z, k, nGtp, contam=*contamR, CNA=*CNAR; | ^ xCNV.c:317:16: warning: unused variable ‘K’ [-Wunused-variable] 317 | int L, N, M, K, i, z, k, nGtp, contam=*contamR, CNA=*CNAR; | ^ xCNV.c: In function ‘baum_welch’: xCNV.c:787:20: warning: unused variable ‘sd_b_tmp’ [-Wunused-variable] 787 | double mu_b_tmp, sd_b_tmp; | ^~~~~~~~ xCNV.c:787:10: warning: unused variable ‘mu_b_tmp’ [-Wunused-variable] 787 | double mu_b_tmp, sd_b_tmp; | ^~~~~~~~ xCNV.c:762:10: warning: variable ‘LL’ set but not used [-Wunused-but-set-variable] 762 | int L, LL, N, NN, M, MM, S, LS, CNA = *RCNA, | ^~ xCNV.c:1839:17: warning: ‘pbf’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1839 | weights(ws, pbf, z, CNA, contam, nGtp, *geno_error); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ xCNV.c:1839:17: warning: ‘nGtp’ may be used uninitialized in this function [-Wmaybe-uninitialized] gcc -shared -L/home/biocbuild/bbs-3.13-bioc/R/lib -L/usr/local/lib -o genoCN.so tnorm_mle.o utility.o xCNV.o -L/home/biocbuild/bbs-3.13-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.13-bioc/R/library/00LOCK-genoCN/00new/genoCN/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (genoCN)