Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:36 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the genefu package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/genefu.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 714/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
genefu 2.24.2 (landing page) Benjamin Haibe-Kains
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: genefu |
Version: 2.24.2 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:genefu.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings genefu_2.24.2.tar.gz |
StartedAt: 2021-10-14 19:20:04 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 19:23:37 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 212.4 seconds |
RetCode: 0 |
Status: OK |
CheckDir: genefu.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:genefu.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings genefu_2.24.2.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.13-bioc/meat/genefu.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘genefu/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘genefu’ version ‘2.24.2’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .git_fetch_output.txt .git_merge_output.txt These were most likely included in error. See section ‘Package structure’ in the ‘Writing R Extensions’ manual. * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘genefu’ can be installed ... OK * checking installed package size ... NOTE installed size is 5.2Mb sub-directories of 1Mb or more: data 4.0Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Packages in Depends field not imported from: ‘AIMS’ ‘biomaRt’ ‘iC10’ These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. Unexported objects imported by ':::' calls: ‘mclust:::grid1’ ‘mclust:::grid2’ See the note in ?`:::` about the use of this operator. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See ‘/Users/biocbuild/bbs-3.13-bioc/meat/genefu.Rcheck/00check.log’ for details.
genefu.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL genefu ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’ * installing *source* package ‘genefu’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (genefu)
genefu.Rcheck/genefu-Ex.timings
name | user | system | elapsed | |
bimod | 0.309 | 0.012 | 0.320 | |
boxplotplus2 | 0.010 | 0.001 | 0.011 | |
claudinLow | 1.492 | 0.022 | 1.516 | |
compareProtoCor | 1.246 | 0.012 | 1.260 | |
compute.pairw.cor.meta | 1.782 | 0.033 | 1.818 | |
compute.proto.cor.meta | 1.187 | 0.016 | 1.206 | |
cordiff.dep | 0.143 | 0.004 | 0.147 | |
endoPredict | 0.150 | 0.007 | 0.157 | |
fuzzy.ttest | 0.229 | 0.020 | 0.250 | |
gene70 | 0.353 | 0.011 | 0.365 | |
gene76 | 0.164 | 0.007 | 0.172 | |
geneid.map | 0.153 | 0.006 | 0.159 | |
genius | 0.302 | 0.021 | 0.325 | |
ggi | 0.164 | 0.010 | 0.174 | |
ihc4 | 0.141 | 0.010 | 0.152 | |
intrinsic.cluster | 0.590 | 0.016 | 0.582 | |
intrinsic.cluster.predict | 0.260 | 0.009 | 0.269 | |
map.datasets | 1.113 | 0.013 | 1.127 | |
molecular.subtyping | 3.040 | 0.114 | 3.158 | |
npi | 0.160 | 0.009 | 0.169 | |
oncotypedx | 0.169 | 0.005 | 0.175 | |
ovcAngiogenic | 0.201 | 0.010 | 0.212 | |
ovcCrijns | 0.178 | 0.007 | 0.184 | |
ovcTCGA | 0.359 | 0.008 | 0.368 | |
ovcYoshihara | 0.192 | 0.007 | 0.200 | |
pik3cags | 0.164 | 0.007 | 0.171 | |
power.cor | 0.001 | 0.000 | 0.001 | |
ps.cluster | 0.535 | 0.014 | 0.528 | |
read.m.file | 0.032 | 0.003 | 0.035 | |
rename.duplicate | 0.002 | 0.001 | 0.003 | |
rescale | 0.291 | 0.007 | 0.298 | |
rorS | 0.269 | 0.007 | 0.277 | |
setcolclass.df | 0.002 | 0.000 | 0.002 | |
sig.score | 0.164 | 0.008 | 0.173 | |
spearmanCI | 0 | 0 | 0 | |
st.gallen | 0.124 | 0.006 | 0.131 | |
stab.fs | 0.137 | 0.006 | 0.144 | |
stab.fs.ranking | 0.813 | 0.025 | 0.843 | |
strescR | 0.001 | 0.000 | 0.001 | |
subtype.cluster | 0.875 | 0.034 | 0.910 | |
subtype.cluster.predict | 0.385 | 0.012 | 0.399 | |
tamr13 | 0.189 | 0.007 | 0.196 | |
tbrm | 0.001 | 0.000 | 0.001 | |
weighted.meanvar | 0 | 0 | 0 | |
write.m.file | 0.004 | 0.002 | 0.007 | |