Farhad Shokoohi
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/fmrs |
| git_branch: RELEASE_3_13 |
| git_last_commit: 0aa7bb6 |
| git_last_commit_date: 2021-05-19 12:53:33 -0400 (Wed, 19 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:05 -0400 (Fri, 15 Oct 2021).
|
To the developers/maintainers of the fmrs package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/fmrs.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 671/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| fmrs 1.2.0 (landing page) Farhad Shokoohi
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: fmrs |
| Version: 1.2.0 |
| Command: rm -rf fmrs.buildbin-libdir && mkdir fmrs.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=fmrs.buildbin-libdir fmrs_1.2.0.tar.gz |
| StartedAt: 2021-10-15 09:23:12 -0400 (Fri, 15 Oct 2021) |
| EndedAt: 2021-10-15 09:24:38 -0400 (Fri, 15 Oct 2021) |
| EllapsedTime: 86.1 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: fmrs_1.2.0.zip |
| PackageFileSize: 343 KiB |
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###
### Running command:
###
### rm -rf fmrs.buildbin-libdir && mkdir fmrs.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=fmrs.buildbin-libdir fmrs_1.2.0.tar.gz
###
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install for i386
* installing *source* package 'fmrs' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"c:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c fmrs.c -o fmrs.o
fmrs.c: In function 'minimum':
fmrs.c:138:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
for(i = 0; i < ncov1; i++)
^~~
fmrs.c:142:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
return(min1);
^~~~~~
fmrs.c: In function 'maximum':
fmrs.c:152:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
for(i = 0; i < ncov1; i++)
^~~
fmrs.c:156:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
return(max1);
^~~~~~
fmrs.c: In function 'FMR_Norm_Surv_EM_MLE':
fmrs.c:457:11: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
for(j = 0; j < (ONCOV[k1] + 1); j++)
^~~
fmrs.c:463:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
for (i = 0; i < (ONCOV[k1] + 1); i++) {
^~~
fmrs.c:285:12: warning: variable 'multX' set but not used [-Wunused-but-set-variable]
double multX[nsize][NCOV][NCOMP];
^~~~~
fmrs.c: In function 'FMR_Norm_Surv_EM_VarSel':
fmrs.c:883:9: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
for(j = 0; j < NCOV; j++)
^~~
fmrs.c:887:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
for(i = 0; i < ONCOV[k1]; i++){
^~~
fmrs.c:915:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
for(j = 0; j < (ONCOV[k1] + 1); j++)
^~~
fmrs.c:921:15: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
for (i = 0; i < (ONCOV[k1] + 1); i++) {
^~~
fmrs.c:687:12: warning: variable 'multX' set but not used [-Wunused-but-set-variable]
double multX[nsize][NCOV][NCOMP];
^~~~~
fmrs.c: In function 'FMR_Norm_Surv_CwTuneParSel':
fmrs.c:1403:11: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
for(j = 0; j < (ONCOV[k1] + 1); j++)
^~~
fmrs.c:1409:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
for (i = 0; i < (ONCOV[k1] + 1); i++) {
^~~
fmrs.c:1218:12: warning: variable 'new_pi0' set but not used [-Wunused-but-set-variable]
double new_pi0[NCOMP];
^~~~~~~
fmrs.c:1211:12: warning: variable 'new_sigma0' set but not used [-Wunused-but-set-variable]
double new_sigma0[NCOMP];
^~~~~~~~~~
fmrs.c:1196:12: warning: variable 'multX' set but not used [-Wunused-but-set-variable]
double multX[nsize][NCOV][NCOMP];
^~~~~
fmrs.c: In function 'FMR_Weibl_Surv_EM_MLE':
fmrs.c:1752:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
for(j = 0; j < (ONCOV[k1] + 1); j++)
^~~
fmrs.c:1758:15: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
for (i = 0; i < (ONCOV[k1] + 1); i++) {
^~~
fmrs.c:1547:12: warning: variable 'multX' set but not used [-Wunused-but-set-variable]
double multX[nsize][NCOV][NCOMP];
^~~~~
fmrs.c: In function 'FMR_Weibl_Surv_EM_VarSel':
fmrs.c:2205:11: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
for(j = 0; j < (NCOV + 1); j++)
^~~
fmrs.c:2212:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
for(i = 0; i < (NCOV + 1); i++){
^~~
fmrs.c:2251:15: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
for(j = 0; j < (NCOV + 2); j++)
^~~
fmrs.c:2257:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
for (i = 0; i < (NCOV + 2); i++) {
^~~
fmrs.c:2271:19: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
for(j = 0; j < (NCOV + 1); j++)
^~~
fmrs.c:2277:21: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
sumi5[k1] = 0.0;
^~~~~
fmrs.c: In function 'FMR_Weibl_Surv_CwTuneParSel':
fmrs.c:2745:11: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
for(j = 0; j < NCOV; j++)
^~~
fmrs.c:2750:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
for(i = 0; i < ONCOV[k1]; i++){
^~~
fmrs.c:2553:12: warning: variable 'multX' set but not used [-Wunused-but-set-variable]
double multX[nsize][NCOV][k1];
^~~~~
fmrs.c: In function 'FMR_Norm_Surv_EM_VarSel':
fmrs.c:748:12: warning: 'sat_den' may be used uninitialized in this function [-Wmaybe-uninitialized]
double sat_den;
^~~~~~~
fmrs.c: In function 'FMR_Weibl_Surv_EM_VarSel':
fmrs.c:2072:12: warning: 'sat_den' may be used uninitialized in this function [-Wmaybe-uninitialized]
double sat_den;
^~~~~~~
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"c:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c fmrs_init.c -o fmrs_init.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o fmrs.dll tmp.def fmrs.o fmrs_init.o -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/fmrs.buildbin-libdir/00LOCK-fmrs/00new/fmrs/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'fmrs'
finding HTML links ... done
BIC-methods html
coefficients-methods html
dispersion-methods html
fitted-methods html
fmrs-package html
fmrs.gendata-methods html
fmrs.mle-methods html
fmrs.tunsel-methods html
fmrs.varsel-methods html
fmrsfit-class html
fmrstunpar-class html
logLik-methods html
mixProp-methods html
ncomp-methods html
ncov-methods html
nobs-methods html
residuals-methods html
summary-methods html
weights-methods html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'fmrs' ...
** libs
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c fmrs.c -o fmrs.o
fmrs.c: In function 'minimum':
fmrs.c:138:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
for(i = 0; i < ncov1; i++)
^~~
fmrs.c:142:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
return(min1);
^~~~~~
fmrs.c: In function 'maximum':
fmrs.c:152:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
for(i = 0; i < ncov1; i++)
^~~
fmrs.c:156:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
return(max1);
^~~~~~
fmrs.c: In function 'FMR_Norm_Surv_EM_MLE':
fmrs.c:457:11: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
for(j = 0; j < (ONCOV[k1] + 1); j++)
^~~
fmrs.c:463:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
for (i = 0; i < (ONCOV[k1] + 1); i++) {
^~~
fmrs.c:285:12: warning: variable 'multX' set but not used [-Wunused-but-set-variable]
double multX[nsize][NCOV][NCOMP];
^~~~~
fmrs.c: In function 'FMR_Norm_Surv_EM_VarSel':
fmrs.c:883:9: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
for(j = 0; j < NCOV; j++)
^~~
fmrs.c:887:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
for(i = 0; i < ONCOV[k1]; i++){
^~~
fmrs.c:915:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
for(j = 0; j < (ONCOV[k1] + 1); j++)
^~~
fmrs.c:921:15: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
for (i = 0; i < (ONCOV[k1] + 1); i++) {
^~~
fmrs.c:687:12: warning: variable 'multX' set but not used [-Wunused-but-set-variable]
double multX[nsize][NCOV][NCOMP];
^~~~~
fmrs.c: In function 'FMR_Norm_Surv_CwTuneParSel':
fmrs.c:1403:11: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
for(j = 0; j < (ONCOV[k1] + 1); j++)
^~~
fmrs.c:1409:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
for (i = 0; i < (ONCOV[k1] + 1); i++) {
^~~
fmrs.c:1218:12: warning: variable 'new_pi0' set but not used [-Wunused-but-set-variable]
double new_pi0[NCOMP];
^~~~~~~
fmrs.c:1211:12: warning: variable 'new_sigma0' set but not used [-Wunused-but-set-variable]
double new_sigma0[NCOMP];
^~~~~~~~~~
fmrs.c:1196:12: warning: variable 'multX' set but not used [-Wunused-but-set-variable]
double multX[nsize][NCOV][NCOMP];
^~~~~
fmrs.c: In function 'FMR_Weibl_Surv_EM_MLE':
fmrs.c:1752:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
for(j = 0; j < (ONCOV[k1] + 1); j++)
^~~
fmrs.c:1758:15: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
for (i = 0; i < (ONCOV[k1] + 1); i++) {
^~~
fmrs.c:1547:12: warning: variable 'multX' set but not used [-Wunused-but-set-variable]
double multX[nsize][NCOV][NCOMP];
^~~~~
fmrs.c: In function 'FMR_Weibl_Surv_EM_VarSel':
fmrs.c:2205:11: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
for(j = 0; j < (NCOV + 1); j++)
^~~
fmrs.c:2212:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
for(i = 0; i < (NCOV + 1); i++){
^~~
fmrs.c:2251:15: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
for(j = 0; j < (NCOV + 2); j++)
^~~
fmrs.c:2257:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
for (i = 0; i < (NCOV + 2); i++) {
^~~
fmrs.c:2271:19: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
for(j = 0; j < (NCOV + 1); j++)
^~~
fmrs.c:2277:21: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
sumi5[k1] = 0.0;
^~~~~
fmrs.c: In function 'FMR_Weibl_Surv_CwTuneParSel':
fmrs.c:2745:11: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
for(j = 0; j < NCOV; j++)
^~~
fmrs.c:2750:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
for(i = 0; i < ONCOV[k1]; i++){
^~~
fmrs.c:2553:12: warning: variable 'multX' set but not used [-Wunused-but-set-variable]
double multX[nsize][NCOV][k1];
^~~~~
fmrs.c: In function 'FMR_Norm_Surv_EM_VarSel':
fmrs.c:748:12: warning: 'sat_den' may be used uninitialized in this function [-Wmaybe-uninitialized]
double sat_den;
^~~~~~~
fmrs.c: In function 'FMR_Weibl_Surv_EM_VarSel':
fmrs.c:2072:12: warning: 'sat_den' may be used uninitialized in this function [-Wmaybe-uninitialized]
double sat_den;
^~~~~~~
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c fmrs_init.c -o fmrs_init.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o fmrs.dll tmp.def fmrs.o fmrs_init.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/fmrs.buildbin-libdir/fmrs/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'fmrs' as fmrs_1.2.0.zip
* DONE (fmrs)