Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:05 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the flowMerge package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/flowMerge.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 656/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
flowMerge 2.40.0 (landing page) Greg Finak
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: flowMerge |
Version: 2.40.0 |
Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:flowMerge.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings flowMerge_2.40.0.tar.gz |
StartedAt: 2021-10-14 23:14:45 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 23:16:55 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 130.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: flowMerge.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:flowMerge.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings flowMerge_2.40.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/flowMerge.Rcheck' * using R version 4.1.1 (2021-08-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'flowMerge/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'flowMerge' version '2.40.0' * checking package namespace information ... OK * checking package dependencies ... NOTE Packages which this enhances but not available for checking: 'doMC', 'multicore' Depends: includes the non-default packages: 'graph', 'feature', 'flowClust', 'Rgraphviz', 'foreach', 'snow' Adding so many packages to the search path is excessive and importing selectively is preferable. * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'flowMerge' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Packages in Depends field not imported from: 'foreach' 'snow' These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE initPFlowMerge: no visible global function definition for 'clusterEvalQ' mergeClusters: no visible global function definition for '%dopar%' mergeClusters: no visible global function definition for 'foreach' mergeClusters: no visible global function definition for '%do%' pFlowClust : <anonymous>: no visible global function definition for 'clusterMap' pFlowClust: no visible global function definition for 'clusterMap' ptree: no visible global function definition for 'subGraph' ptree: no visible global function definition for 'nodes' ptree : <anonymous>: no visible global function definition for 'nodeDataDefaults<-' ptree : <anonymous>: no visible global function definition for 'nodeData<-' ptree : <anonymous>: no visible global function definition for 'subGraph' ptree : <anonymous>: no visible global function definition for 'nodeRenderInfo<-' Undefined global functions or variables: %do% %dopar% clusterEvalQ clusterMap foreach nodeData<- nodeDataDefaults<- nodeRenderInfo<- nodes subGraph * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See 'C:/Users/biocbuild/bbs-3.13-bioc/meat/flowMerge.Rcheck/00check.log' for details.
flowMerge.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/flowMerge_2.40.0.tar.gz && rm -rf flowMerge.buildbin-libdir && mkdir flowMerge.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowMerge.buildbin-libdir flowMerge_2.40.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL flowMerge_2.40.0.zip && rm flowMerge_2.40.0.tar.gz flowMerge_2.40.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 399k 100 399k 0 0 1310k 0 --:--:-- --:--:-- --:--:-- 1313k install for i386 * installing *source* package 'flowMerge' ... ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'flowMerge' finding HTML links ... done NENT html checkForRemoteErrors html fitPiecewiseLinreg-methods html fitPiecewiseLinreg html flagOutliers-methods html flagOutliers html flowClust.res html flowMerge-class html finding level-2 HTML links ... done flowMerge-internal html flowMerge-package html flowObj-class html flowObj html initPFlowMerge html map html merge-methods html merge html mergeClusters html mergeClusters2 html pFlowClust html pFlowMerge html plot-methods html ptree html show-methods html split-methods html summary-methods html updateU html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'flowMerge' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'flowMerge' as flowMerge_2.40.0.zip * DONE (flowMerge) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'flowMerge' successfully unpacked and MD5 sums checked
flowMerge.Rcheck/examples_i386/flowMerge-Ex.timings
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flowMerge.Rcheck/examples_x64/flowMerge-Ex.timings
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