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This page was generated on 2021-10-15 15:06:05 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the flowMatch package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/flowMatch.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 654/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
flowMatch 1.28.0 (landing page) Ariful Azad
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: flowMatch |
Version: 1.28.0 |
Command: rm -rf flowMatch.buildbin-libdir && mkdir flowMatch.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowMatch.buildbin-libdir flowMatch_1.28.0.tar.gz |
StartedAt: 2021-10-15 09:20:54 -0400 (Fri, 15 Oct 2021) |
EndedAt: 2021-10-15 09:22:20 -0400 (Fri, 15 Oct 2021) |
EllapsedTime: 85.8 seconds |
RetCode: 0 |
Status: OK |
PackageFile: flowMatch_1.28.0.zip |
PackageFileSize: 4.608 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf flowMatch.buildbin-libdir && mkdir flowMatch.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowMatch.buildbin-libdir flowMatch_1.28.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'flowMatch' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"c:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BipartiteGraph.cpp -o BipartiteGraph.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"c:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c MinWghtEdgCoverBipartite.cpp -o MinWghtEdgCoverBipartite.o MinWghtEdgCoverBipartite.cpp: In function 'void update_height(mclust&, std::vector<std::vector<templatePair> >, std::vector<std::vector<BipartiteGraph> >, double)': MinWghtEdgCoverBipartite.cpp:271:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare] for(int i=0; i<tree.height.size(); i++) ~^~~~~~~~~~~~~~~~~~~ MinWghtEdgCoverBipartite.cpp: In function 'void computeDegConsistencyNew(std::vector<std::vector<templatePair> >&, std::vector<std::vector<BipartiteGraph> >&, double, double)': MinWghtEdgCoverBipartite.cpp:487:10: warning: variable 'delta_cx_cy' set but not used [-Wunused-but-set-variable] int delta_cx_cy = 0; ^~~~~~~~~~~ MinWghtEdgCoverBipartite.cpp: In function 'classTemplate buildTemplate(std::vector<std::vector<templatePair> >&, double, mclust&)': MinWghtEdgCoverBipartite.cpp:804:12: warning: 'template2' may be used uninitialized in this function [-Wmaybe-uninitialized] rearrange(templatePairs, mergedTemplate, template1, template2,lambda); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ MinWghtEdgCoverBipartite.cpp:804:12: warning: 'template1' may be used uninitialized in this function [-Wmaybe-uninitialized] "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"c:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c flowMatch.cpp -o flowMatch.o flowMatch.cpp: In function 'Rcpp::List computeMEC(Rcpp::NumericMatrix, double)': flowMatch.cpp:43:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<int> >::size_type' {aka 'unsigned int'} [-Wsign-compare] for(int i=0; i<mec.sCoverVecVec.size(); i++) ~^~~~~~~~~~~~~~~~~~~~~~~~ flowMatch.cpp:45:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'unsigned int'} [-Wsign-compare] for(int j=0; j<mec.sCoverVecVec[i].size(); j++) ~^~~~~~~~~~~~~~~~~~~~~~~~~~~ flowMatch.cpp:53:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<int> >::size_type' {aka 'unsigned int'} [-Wsign-compare] for(int i=0; i<mec.tCoverVecVec.size(); i++) ~^~~~~~~~~~~~~~~~~~~~~~~~ flowMatch.cpp:55:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'unsigned int'} [-Wsign-compare] for(int j=0; j<mec.tCoverVecVec[i].size(); j++) ~^~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o flowMatch.dll tmp.def BipartiteGraph.o MinWghtEdgCoverBipartite.o flowMatch.o -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/flowMatch.buildbin-libdir/00LOCK-flowMatch/00new/flowMatch/libs/i386 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'flowMatch' finding HTML links ... done Cluster-class html ClusterMatch-class html ClusteredSample-class html MetaCluster-class html Template-class html create.template html dist.cluster html dist.matrix html dist.sample html dist.template html flowMatch-package html mahalanobis.dist html match.clusters html symmetric.KL html template.tree html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'flowMatch' ... ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BipartiteGraph.cpp -o BipartiteGraph.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c MinWghtEdgCoverBipartite.cpp -o MinWghtEdgCoverBipartite.o MinWghtEdgCoverBipartite.cpp: In function 'void update_height(mclust&, std::vector<std::vector<templatePair> >, std::vector<std::vector<BipartiteGraph> >, double)': MinWghtEdgCoverBipartite.cpp:271:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare] for(int i=0; i<tree.height.size(); i++) ~^~~~~~~~~~~~~~~~~~~ MinWghtEdgCoverBipartite.cpp: In function 'void computeDegConsistencyNew(std::vector<std::vector<templatePair> >&, std::vector<std::vector<BipartiteGraph> >&, double, double)': MinWghtEdgCoverBipartite.cpp:487:10: warning: variable 'delta_cx_cy' set but not used [-Wunused-but-set-variable] int delta_cx_cy = 0; ^~~~~~~~~~~ MinWghtEdgCoverBipartite.cpp: In function 'classTemplate buildTemplate(std::vector<std::vector<templatePair> >&, double, mclust&)': MinWghtEdgCoverBipartite.cpp:804:12: warning: 'template2' may be used uninitialized in this function [-Wmaybe-uninitialized] rearrange(templatePairs, mergedTemplate, template1, template2,lambda); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ MinWghtEdgCoverBipartite.cpp:804:12: warning: 'template1' may be used uninitialized in this function [-Wmaybe-uninitialized] "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c flowMatch.cpp -o flowMatch.o flowMatch.cpp: In function 'Rcpp::List computeMEC(Rcpp::NumericMatrix, double)': flowMatch.cpp:43:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<int> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] for(int i=0; i<mec.sCoverVecVec.size(); i++) ~^~~~~~~~~~~~~~~~~~~~~~~~ flowMatch.cpp:45:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare] for(int j=0; j<mec.sCoverVecVec[i].size(); j++) ~^~~~~~~~~~~~~~~~~~~~~~~~~~~ flowMatch.cpp:53:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<int> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] for(int i=0; i<mec.tCoverVecVec.size(); i++) ~^~~~~~~~~~~~~~~~~~~~~~~~ flowMatch.cpp:55:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare] for(int j=0; j<mec.tCoverVecVec[i].size(); j++) ~^~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o flowMatch.dll tmp.def BipartiteGraph.o MinWghtEdgCoverBipartite.o flowMatch.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/flowMatch.buildbin-libdir/flowMatch/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'flowMatch' as flowMatch_1.28.0.zip * DONE (flowMatch)