Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:05 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the flowGraph package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/flowGraph.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 652/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
flowGraph 1.0.0 (landing page) Alice Yue
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: flowGraph |
Version: 1.0.0 |
Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:flowGraph.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings flowGraph_1.0.0.tar.gz |
StartedAt: 2021-10-14 23:14:13 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 23:20:55 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 401.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: flowGraph.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:flowGraph.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings flowGraph_1.0.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/flowGraph.Rcheck' * using R version 4.1.1 (2021-08-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'flowGraph/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'flowGraph' version '1.0.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'flowGraph' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE get_child: no visible binding for global variable 'no_cores' get_paren: no visible binding for global variable 'no_cores' ms_psig: no visible binding for global variable 'meta' Undefined global functions or variables: meta no_cores * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed fg_save_plots 37.80 0.36 38.37 fg_load 37.39 0.36 37.81 fg_save 36.68 0.46 37.16 ** running examples for arch 'x64' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed fg_save_plots 39.39 0.35 39.73 fg_save 38.93 0.36 39.30 fg_load 36.75 0.44 37.22 * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'testthat.R' OK ** running tests for arch 'x64' ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'C:/Users/biocbuild/bbs-3.13-bioc/meat/flowGraph.Rcheck/00check.log' for details.
flowGraph.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/flowGraph_1.0.0.tar.gz && rm -rf flowGraph.buildbin-libdir && mkdir flowGraph.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowGraph.buildbin-libdir flowGraph_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL flowGraph_1.0.0.zip && rm flowGraph_1.0.0.tar.gz flowGraph_1.0.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 425k 100 425k 0 0 1131k 0 --:--:-- --:--:-- --:--:-- 1134k install for i386 * installing *source* package 'flowGraph' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help Loading required namespace: flowGraph *** installing help indices converting help for package 'flowGraph' finding HTML links ... done cell_type_layers html extract_markers html fg_add_feature html fg_add_summary html fg_clean_phen html fg_clear_features html fg_clear_summary html fg_data_fca html fg_data_pos2 html fg_data_pos30 html fg_extract_phenotypes html fg_extract_raw html fg_extract_samples html fg_feat_cumsum html fg_feat_edge_specenr html fg_feat_mean_class html fg_feat_node_prop html fg_feat_node_specenr html fg_feat_prop_edge html fg_get_feature html fg_get_feature_desc html fg_get_feature_means html fg_get_graph html fg_get_markers html fg_get_meta html fg_get_summary html fg_get_summary_desc html fg_get_summary_index html fg_get_summary_tables html fg_gsub_ids html fg_gsub_markers html fg_load html fg_merge html fg_merge_samples html fg_plot html fg_plot_box html fg_plot_pVSdiff html fg_plot_qq html fg_replace_meta html fg_rm_feature html fg_rm_summary html fg_save html fg_save_plots html fg_set_layout html fg_summary html flowGraph-class html flowGraph html flowGraphSubset html flowGraphSubset_summary_adjust html flowGraphSubset_summary_pars html fpurrr_map html get_child html get_eprop html get_paren html get_phen_list html get_phen_meta html ggdf html loop_ind_f html meandiff html ms_create html ms_psig html plot_gr html set_layout_graph html summary_table html test_c html time_output html tstr html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'flowGraph' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'flowGraph' as flowGraph_1.0.0.zip * DONE (flowGraph) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'flowGraph' successfully unpacked and MD5 sums checked
flowGraph.Rcheck/tests_i386/testthat.Rout R version 4.1.1 (2021-08-10) -- "Kick Things" Copyright (C) 2021 The R Foundation for Statistical Computing Platform: i386-w64-mingw32/i386 (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(flowGraph) > > test_check("flowGraph") [ FAIL 0 | WARN 0 | SKIP 0 | PASS 34 ] > > proc.time() user system elapsed 4.79 0.31 5.07 |
flowGraph.Rcheck/tests_x64/testthat.Rout R version 4.1.1 (2021-08-10) -- "Kick Things" Copyright (C) 2021 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(flowGraph) > > test_check("flowGraph") [ FAIL 0 | WARN 0 | SKIP 0 | PASS 34 ] > > proc.time() user system elapsed 5.45 0.21 5.65 |
flowGraph.Rcheck/examples_i386/flowGraph-Ex.timings
|
flowGraph.Rcheck/examples_x64/flowGraph-Ex.timings
|