Effi Kenigsberg
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/fdrame |
| git_branch: RELEASE_3_13 |
| git_last_commit: a59c8a8 |
| git_last_commit_date: 2021-05-19 11:36:09 -0400 (Wed, 19 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:05:40 -0400 (Fri, 15 Oct 2021).
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To the developers/maintainers of the fdrame package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/fdrame.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 625/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| fdrame 1.64.0 (landing page) Effi Kenigsberg
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: fdrame |
| Version: 1.64.0 |
| Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:fdrame.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings fdrame_1.64.0.tar.gz |
| StartedAt: 2021-10-14 09:49:45 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 09:50:04 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 19.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: fdrame.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:fdrame.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings fdrame_1.64.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.13-bioc/meat/fdrame.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘fdrame/DESCRIPTION’ ... OK * this is package ‘fdrame’ version ‘1.64.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘fdrame’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE OnBrowseDesign: no visible binding for global variable ‘designFlag’ OnBrowseDesign: no visible binding for '<<-' assignment to ‘designFlag’ OnBrowseDesign: no visible binding for '<<-' assignment to ‘vector.list’ OnBrowseDesign: no visible binding for global variable ‘vector.list’ OnBrowseDesign: no visible binding for '<<-' assignment to ‘ttdesignlist’ OnBrowseDesign: no visible binding for '<<-' assignment to ‘tl’ OnBrowseDesign: no visible binding for global variable ‘ttdesignlist’ OnBrowseDesign: no visible binding for global variable ‘tl’ OnBrowseDesign: no visible binding for global variable ‘fdrtt’ OnBrowseInput: no visible binding for '<<-' assignment to ‘filename.input.tk’ OnBrowseInput: no visible binding for global variable ‘filename.input.tk’ OnBrowseInput: no visible binding for '<<-' assignment to ‘filename.input’ OnBrowseInput: no visible binding for global variable ‘entry.Filename.input’ OnBrowseInput: no visible binding for global variable ‘filename.input’ OnBrowseOutput: no visible binding for '<<-' assignment to ‘filename.output.tk’ OnBrowseOutput: no visible binding for global variable ‘filename.output.tk’ OnBrowseOutput: no visible binding for '<<-' assignment to ‘filename.output’ OnBrowseOutput: no visible binding for global variable ‘entry.Filename.output’ OnBrowseOutput: no visible binding for global variable ‘filename.output’ OnCancel: no visible binding for global variable ‘ttdesignlist’ OnCancel: no visible binding for global variable ‘fdrtt’ OnCancel: no visible binding for '<<-' assignment to ‘designFlag’ OnCbfa1: no visible binding for global variable ‘cbfa1Value’ OnCbfa1: no visible binding for '<<-' assignment to ‘cbfa5Value’ OnCbfa1: no visible binding for global variable ‘cbfa5’ OnCbfa2: no visible binding for global variable ‘cbfa2Value’ OnCbfa2: no visible binding for '<<-' assignment to ‘cbfa5Value’ OnCbfa2: no visible binding for global variable ‘cbfa5’ OnCbfa3: no visible binding for global variable ‘cbfa3Value’ OnCbfa3: no visible binding for '<<-' assignment to ‘cbfa5Value’ OnCbfa3: no visible binding for global variable ‘cbfa5’ OnCbfa4: no visible binding for global variable ‘cbfa4Value’ OnCbfa4: no visible binding for '<<-' assignment to ‘cbfa5Value’ OnCbfa4: no visible binding for global variable ‘cbfa5’ OnCompute: no visible binding for global variable ‘fdrtt’ OnCompute: no visible binding for global variable ‘rbnoValue’ OnCompute: no visible binding for global variable ‘rbfaValue’ OnCompute: no visible binding for global variable ‘cbpl1Value’ OnCompute: no visible binding for global variable ‘cbpl2Value’ OnCompute: no visible binding for global variable ‘cbpl3Value’ OnCompute: no visible binding for global variable ‘cbfa1Value’ OnCompute: no visible binding for global variable ‘cbfa2Value’ OnCompute: no visible binding for global variable ‘cbfa3Value’ OnCompute: no visible binding for global variable ‘cbfa4Value’ OnCompute: no visible binding for global variable ‘cbfa5Value’ OnCompute: no visible binding for global variable ‘filename.input’ OnCompute: no visible binding for global variable ‘filename.output’ OnCompute: no visible binding for global variable ‘design.tcl’ OnCompute: no visible binding for global variable ‘permsNum’ OnCompute: no visible binding for '<<-' assignment to ‘a’ OnOK: no visible binding for global variable ‘vector.list’ OnOK: no visible binding for global variable ‘tl’ OnOK: no visible binding for global variable ‘ttdesignlist’ OnOK: no visible binding for '<<-' assignment to ‘designVal’ OnOK: no visible binding for '<<-' assignment to ‘design.tcl’ OnOK: no visible binding for global variable ‘entry.Design’ OnOK: no visible binding for global variable ‘design.tcl’ OnOK: no visible binding for global variable ‘fdrtt’ OnOK: no visible binding for '<<-' assignment to ‘designFlag’ OnRbfa1: no visible binding for global variable ‘cbfa1’ OnRbfa1: no visible binding for global variable ‘cbfa2’ OnRbfa2: no visible binding for global variable ‘cbfa1’ OnRbfa2: no visible binding for global variable ‘cbfa2’ OnRbfa3: no visible binding for global variable ‘cbfa1’ OnRbfa3: no visible binding for global variable ‘cbfa2’ OnRbfa4: no visible binding for global variable ‘cbfa1’ OnRbfa4: no visible binding for global variable ‘cbfa2’ OnRbpm1: no visible binding for global variable ‘entry.Perms’ OnRbpm2: no visible binding for global variable ‘entry.Perms’ fdr.error: no visible binding for global variable ‘fdrtt’ fdr.gui: no visible binding for '<<-' assignment to ‘fdrtt’ fdr.gui: no visible binding for '<<-' assignment to ‘designFlag’ fdr.gui: no visible binding for '<<-' assignment to ‘frameOverall’ fdr.gui: no visible binding for global variable ‘fdrtt’ fdr.gui: no visible binding for '<<-' assignment to ‘frameCompute’ fdr.gui: no visible binding for global variable ‘frameOverall’ fdr.gui: no visible binding for '<<-' assignment to ‘frameInput’ fdr.gui: no visible binding for '<<-' assignment to ‘frameOutput’ fdr.gui: no visible binding for '<<-' assignment to ‘frameFileOutput’ fdr.gui: no visible binding for global variable ‘frameOutput’ fdr.gui: no visible binding for '<<-' assignment to ‘framePmethod’ fdr.gui: no visible binding for '<<-' assignment to ‘frameNorm’ fdr.gui: no visible binding for global variable ‘frameInput’ fdr.gui: no visible binding for '<<-' assignment to ‘frameAdj’ fdr.gui: no visible binding for '<<-' assignment to ‘framePerms’ fdr.gui: no visible binding for '<<-' assignment to ‘frameplot’ fdr.gui: no visible binding for '<<-' assignment to ‘filename.input’ fdr.gui: no visible binding for '<<-' assignment to ‘filename.output’ fdr.gui: no visible binding for '<<-' assignment to ‘design.tcl’ fdr.gui: no visible binding for '<<-' assignment to ‘permsNum’ fdr.gui: no visible binding for '<<-' assignment to ‘entry.Filename.input’ fdr.gui: no visible binding for global variable ‘filename.input’ fdr.gui: no visible binding for '<<-' assignment to ‘entry.Filename.output’ fdr.gui: no visible binding for global variable ‘filename.output’ fdr.gui: no visible binding for '<<-' assignment to ‘entry.Design’ fdr.gui: no visible binding for global variable ‘design.tcl’ fdr.gui: no visible binding for '<<-' assignment to ‘entry.Perms’ fdr.gui: no visible binding for global variable ‘frameAdj’ fdr.gui: no visible binding for global variable ‘permsNum’ fdr.gui: no visible binding for '<<-' assignment to ‘rbpm1’ fdr.gui: no visible binding for global variable ‘framePmethod’ fdr.gui: no visible binding for '<<-' assignment to ‘rbpm2’ fdr.gui: no visible binding for '<<-' assignment to ‘rbno1’ fdr.gui: no visible binding for '<<-' assignment to ‘rbno2’ fdr.gui: no visible binding for '<<-' assignment to ‘rbfa1’ fdr.gui: no visible binding for '<<-' assignment to ‘rbfa2’ fdr.gui: no visible binding for '<<-' assignment to ‘rbfa3’ fdr.gui: no visible binding for '<<-' assignment to ‘rbfa4’ fdr.gui: no visible binding for '<<-' assignment to ‘cbpl1’ fdr.gui: no visible binding for global variable ‘frameplot’ fdr.gui: no visible binding for '<<-' assignment to ‘cbpl2’ fdr.gui: no visible binding for '<<-' assignment to ‘cbpl3’ fdr.gui: no visible binding for '<<-' assignment to ‘cbfa1’ fdr.gui: no visible binding for '<<-' assignment to ‘cbfa2’ fdr.gui: no visible binding for '<<-' assignment to ‘cbfa3’ fdr.gui: no visible binding for '<<-' assignment to ‘cbfa4’ fdr.gui: no visible binding for '<<-' assignment to ‘cbfa5’ fdr.gui: no visible binding for '<<-' assignment to ‘rbpmValue’ fdr.gui: no visible binding for '<<-' assignment to ‘rbnoValue’ fdr.gui: no visible binding for '<<-' assignment to ‘rbfaValue’ fdr.gui: no visible binding for '<<-' assignment to ‘cbpl1Value’ fdr.gui: no visible binding for '<<-' assignment to ‘cbpl2Value’ fdr.gui: no visible binding for '<<-' assignment to ‘cbpl3Value’ fdr.gui: no visible binding for '<<-' assignment to ‘cbfa1Value’ fdr.gui: no visible binding for '<<-' assignment to ‘cbfa2Value’ fdr.gui: no visible binding for '<<-' assignment to ‘cbfa3Value’ fdr.gui: no visible binding for '<<-' assignment to ‘cbfa4Value’ fdr.gui: no visible binding for '<<-' assignment to ‘cbfa5Value’ fdr.gui: no visible binding for global variable ‘rbpm1’ fdr.gui: no visible binding for global variable ‘rbpmValue’ fdr.gui: no visible binding for global variable ‘rbpm2’ fdr.gui: no visible binding for global variable ‘rbno1’ fdr.gui: no visible binding for global variable ‘rbnoValue’ fdr.gui: no visible binding for global variable ‘rbno2’ fdr.gui: no visible binding for global variable ‘rbfa1’ fdr.gui: no visible binding for global variable ‘rbfaValue’ fdr.gui: no visible binding for global variable ‘rbfa2’ fdr.gui: no visible binding for global variable ‘rbfa3’ fdr.gui: no visible binding for global variable ‘rbfa4’ fdr.gui: no visible binding for global variable ‘cbpl1’ fdr.gui: no visible binding for global variable ‘cbpl1Value’ fdr.gui: no visible binding for global variable ‘cbpl2’ fdr.gui: no visible binding for global variable ‘cbpl2Value’ fdr.gui: no visible binding for global variable ‘cbpl3’ fdr.gui: no visible binding for global variable ‘cbpl3Value’ fdr.gui: no visible binding for global variable ‘cbfa1’ fdr.gui: no visible binding for global variable ‘cbfa1Value’ fdr.gui: no visible binding for global variable ‘cbfa2’ fdr.gui: no visible binding for global variable ‘cbfa2Value’ fdr.gui: no visible binding for global variable ‘cbfa3’ fdr.gui: no visible binding for global variable ‘cbfa3Value’ fdr.gui: no visible binding for global variable ‘cbfa4’ fdr.gui: no visible binding for global variable ‘cbfa4Value’ fdr.gui: no visible binding for global variable ‘cbfa5’ fdr.gui: no visible binding for global variable ‘cbfa5Value’ fdr.gui: no visible binding for global variable ‘entry.Perms’ fdr.gui: no visible binding for '<<-' assignment to ‘BrowseInput.but’ fdr.gui: no visible binding for '<<-' assignment to ‘BrowseDesign.but’ fdr.gui: no visible binding for '<<-' assignment to ‘BrowseOutput.but’ fdr.gui: no visible binding for '<<-' assignment to ‘Compute.but’ fdr.gui: no visible binding for global variable ‘frameCompute’ fdr.gui: no visible binding for '<<-' assignment to ‘Help.but’ fdr.gui: no visible binding for global variable ‘entry.Filename.input’ fdr.gui: no visible binding for global variable ‘BrowseInput.but’ fdr.gui: no visible binding for global variable ‘entry.Design’ fdr.gui: no visible binding for global variable ‘BrowseDesign.but’ fdr.gui: no visible binding for global variable ‘entry.Filename.output’ fdr.gui: no visible binding for global variable ‘BrowseOutput.but’ fdr.gui: no visible binding for global variable ‘Help.but’ fdr.gui: no visible binding for global variable ‘Compute.but’ Undefined global functions or variables: BrowseDesign.but BrowseInput.but BrowseOutput.but Compute.but Help.but cbfa1 cbfa1Value cbfa2 cbfa2Value cbfa3 cbfa3Value cbfa4 cbfa4Value cbfa5 cbfa5Value cbpl1 cbpl1Value cbpl2 cbpl2Value cbpl3 cbpl3Value design.tcl designFlag entry.Design entry.Filename.input entry.Filename.output entry.Perms fdrtt filename.input filename.input.tk filename.output filename.output.tk frameAdj frameCompute frameInput frameOutput frameOverall framePmethod frameplot permsNum rbfa1 rbfa2 rbfa3 rbfa4 rbfaValue rbno1 rbno2 rbnoValue rbpm1 rbpm2 rbpmValue tl ttdesignlist vector.list * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... NOTE Note: information on .o files is not available File ‘/home/biocbuild/bbs-3.13-bioc/R/library/fdrame/libs/fdrame.so’: Found ‘rand’, possibly from ‘rand’ (C) Compiled code should not call entry points which might terminate R nor write to stdout/stderr instead of to the console, nor use Fortran I/O nor system RNGs. The detected symbols are linked into the code but might come from libraries and not actually be called. See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual. * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See ‘/home/biocbuild/bbs-3.13-bioc/meat/fdrame.Rcheck/00check.log’ for details.
fdrame.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL fdrame ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’ * installing *source* package ‘fdrame’ ... ** using staged installation ** libs gcc -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c fdr.c -o fdr.o gcc -shared -L/home/biocbuild/bbs-3.13-bioc/R/lib -L/usr/local/lib -o fdrame.so fdr.o -L/home/biocbuild/bbs-3.13-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.13-bioc/R/library/00LOCK-fdrame/00new/fdrame/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fdrame)
fdrame.Rcheck/fdrame-Ex.timings
| name | user | system | elapsed | |
| design | 0.004 | 0.008 | 0.012 | |
| exp.arr | 0.008 | 0.000 | 0.008 | |
| fdrgui | 0.032 | 0.004 | 0.037 | |
| fdrma | 0.454 | 0.043 | 0.509 | |