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This page was generated on 2021-10-15 15:06:04 -0400 (Fri, 15 Oct 2021).
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To the developers/maintainers of the epivizrChart package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/epivizrChart.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 588/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| epivizrChart 1.14.0 (landing page) Hector Corrada Bravo
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: epivizrChart |
| Version: 1.14.0 |
| Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:epivizrChart.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings epivizrChart_1.14.0.tar.gz |
| StartedAt: 2021-10-14 22:52:20 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 22:58:38 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 377.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: epivizrChart.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:epivizrChart.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings epivizrChart_1.14.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/epivizrChart.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'epivizrChart/DESCRIPTION' ... OK
* this is package 'epivizrChart' version '1.14.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'epivizrChart' can be installed ... OK
* checking installed package size ... NOTE
installed size is 8.0Mb
sub-directories of 1Mb or more:
data 3.2Mb
www 3.8Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: 'epivizrServer'
All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'testthat.R'
OK
** running tests for arch 'x64' ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
'C:/Users/biocbuild/bbs-3.13-bioc/meat/epivizrChart.Rcheck/00check.log'
for details.
epivizrChart.Rcheck/00install.out
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###
### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/epivizrChart_1.14.0.tar.gz && rm -rf epivizrChart.buildbin-libdir && mkdir epivizrChart.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=epivizrChart.buildbin-libdir epivizrChart_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL epivizrChart_1.14.0.zip && rm epivizrChart_1.14.0.tar.gz epivizrChart_1.14.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 2543k 100 2543k 0 0 2814k 0 --:--:-- --:--:-- --:--:-- 2816k
install for i386
* installing *source* package 'epivizrChart' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'epivizrChart'
finding HTML links ... done
BlocksTrack-methods html
EpivizBlocksTrack-class html
EpivizChart-class html
EpivizChartDataMgr-class html
EpivizDataSource-class html
EpivizEnvironment-class html
EpivizGenesTrack-class html
EpivizHeatmapPlot-class html
EpivizIGVTrack-class html
EpivizLinePlot-class html
EpivizLineTrack-class html
EpivizNavigation-class html
EpivizScatterPlot-class html
EpivizStackedBlocksTrack-class html
EpivizStackedLinePlot-class html
EpivizStackedLineTrack-class html
EpivizViewComponent-class html
finding level-2 HTML links ... done
EpivizWebComponent-class html
HeatmapPlot-methods html
LinePlot-methods html
LineTrack-methods html
ScatterPlot-methods html
StackedBlocksTrack-methods html
StackedLinePlot-methods html
StackedLineTrack-methods html
append_region-methods html
bcode_eset html
cgi_gr html
chart_default_settings_colors html
dot-constructURL html
dot-initialize_chart html
dot-register_all_the_epiviz_things html
dot-settings_as_df html
epivizChart html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/epivizrChart.buildbin-libdir/00LOCK-epivizrChart/00new/epivizrChart/help/epivizChart.html
epivizEnv html
epivizNav html
get_available_chart_types html
get_registered_data_types html
json_parser html
json_writer html
plot-EpivizEnvironment-ANY-method html
rand_id html
sumexp html
tcga_colon_blocks html
tcga_colon_curves html
tcga_colon_expression html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'epivizrChart' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'epivizrChart' as epivizrChart_1.14.0.zip
* DONE (epivizrChart)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'epivizrChart' successfully unpacked and MD5 sums checked
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epivizrChart.Rcheck/tests_i386/testthat.Rout
R version 4.1.1 (2021-08-10) -- "Kick Things"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(epivizrChart)
>
> test_check("epivizrChart")
== Skipped tests ===============================================================
* On Bioconductor (8)
[ FAIL 0 | WARN 0 | SKIP 8 | PASS 0 ]
>
> proc.time()
user system elapsed
10.93 1.07 12.00
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epivizrChart.Rcheck/tests_x64/testthat.Rout
R version 4.1.1 (2021-08-10) -- "Kick Things"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(epivizrChart)
>
> test_check("epivizrChart")
== Skipped tests ===============================================================
* On Bioconductor (8)
[ FAIL 0 | WARN 0 | SKIP 8 | PASS 0 ]
>
> proc.time()
user system elapsed
12.37 0.53 12.89
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epivizrChart.Rcheck/examples_i386/epivizrChart-Ex.timings
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epivizrChart.Rcheck/examples_x64/epivizrChart-Ex.timings
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