Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:35 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the epigenomix package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/epigenomix.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 582/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
epigenomix 1.32.0 (landing page) Hans-Ulrich Klein
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: epigenomix |
Version: 1.32.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:epigenomix.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings epigenomix_1.32.0.tar.gz |
StartedAt: 2021-10-14 18:46:35 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 18:52:18 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 343.7 seconds |
RetCode: 0 |
Status: OK |
CheckDir: epigenomix.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:epigenomix.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings epigenomix_1.32.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.13-bioc/meat/epigenomix.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘epigenomix/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘epigenomix’ version ‘1.32.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .git_fetch_output.txt .git_merge_output.txt These were most likely included in error. See section ‘Package structure’ in the ‘Writing R Extensions’ manual. * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘epigenomix’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed plotChains 32.898 0.363 33.339 bayesMixModel 27.706 0.353 28.205 mlMixModel 13.245 0.236 13.860 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.13-bioc/meat/epigenomix.Rcheck/00check.log’ for details.
epigenomix.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL epigenomix ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’ * installing *source* package ‘epigenomix’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (epigenomix)
epigenomix.Rcheck/epigenomix-Ex.timings
name | user | system | elapsed | |
ChIPseqSet-class | 0.001 | 0.001 | 0.003 | |
MixModel-class | 0.001 | 0.001 | 0.001 | |
MixModelBayes-class | 0.001 | 0.001 | 0.001 | |
MixModelML-class | 0.001 | 0.000 | 0.001 | |
MixtureComponent-class | 0.000 | 0.000 | 0.001 | |
bayesMixModel | 27.706 | 0.353 | 28.205 | |
calculateCrossCorrelation | 1.012 | 0.014 | 1.026 | |
eSet | 0.014 | 0.002 | 0.017 | |
fpkm | 0.045 | 0.004 | 0.050 | |
getAlignmentQuality | 0.000 | 0.000 | 0.001 | |
integrateData | 0.242 | 0.001 | 0.243 | |
mappedReads | 0.067 | 0.003 | 0.070 | |
matchProbeToPromoter | 0.502 | 0.008 | 0.557 | |
mlMixModel | 13.245 | 0.236 | 13.860 | |
normalize | 0.269 | 0.001 | 0.270 | |
normalizeChIP | 0.226 | 0.002 | 0.228 | |
plotChains | 32.898 | 0.363 | 33.339 | |
plotClassification | 0.034 | 0.001 | 0.036 | |
plotComponents | 0.046 | 0.001 | 0.048 | |
summarizeReads | 0.591 | 0.005 | 0.597 | |
transToTSS | 0.003 | 0.002 | 0.006 | |