Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:03 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the eegc package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/eegc.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 558/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
eegc 1.18.0 (landing page) Xiaoyuan Zhou
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | WARNINGS | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |||||||||
Package: eegc |
Version: 1.18.0 |
Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:eegc.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings eegc_1.18.0.tar.gz |
StartedAt: 2021-10-14 22:40:13 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 22:53:08 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 775.3 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: eegc.Rcheck |
Warnings: 2 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:eegc.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings eegc_1.18.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/eegc.Rcheck' * using R version 4.1.1 (2021-08-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'eegc/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'eegc' version '1.18.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'eegc' can be installed ... OK * checking installed package size ... NOTE installed size is 11.3Mb sub-directories of 1Mb or more: data 10.5Mb * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE categorizeGene : <anonymous>: no visible global function definition for 'quantile' densityPlot: no visible binding for global variable 'density' densityPlot: no visible global function definition for 'lines' densityPlot: no visible global function definition for 'axis' densityPlot: no visible global function definition for 'adjustcolor' densityPlot: no visible global function definition for 'legend' densityPlot : <anonymous>: no visible global function definition for 'quantile' densityPlot: no visible global function definition for 'text' densityPlot: no visible global function definition for 'dev.copy2pdf' diffGene: no visible global function definition for 'model.matrix' diffGene: no visible binding for global variable 'treat' diffGene: no visible binding for global variable 'control' diffGene: no visible global function definition for 'results' diffGene: no visible global function definition for 'p.adjust' dotPercentage: no visible global function definition for 'lines' dotPercentage: no visible global function definition for 'axis' dotPercentage: no visible global function definition for 'text' dotPercentage: no visible global function definition for 'par' enrichment : enrichment : <anonymous>: no visible global function definition for 'phyper' enrichment : enrichment: no visible global function definition for 'p.adjust' grnPlot: no visible global function definition for 'title' grnPlot: no visible global function definition for 'legend' markerScatter: no visible global function definition for 'colorRampPalette' markerScatter: no visible global function definition for 'points' markerScatter: no visible global function definition for 'lm' markerScatter: no visible global function definition for 'abline' markerScatter: no visible global function definition for 'text' markerScatter: no visible global function definition for 'legend' Undefined global functions or variables: abline adjustcolor axis colorRampPalette control density dev.copy2pdf legend lines lm model.matrix p.adjust par phyper points quantile results text title treat Consider adding importFrom("grDevices", "adjustcolor", "colorRampPalette", "dev.copy2pdf") importFrom("graphics", "abline", "axis", "legend", "lines", "par", "points", "text", "title") importFrom("stats", "density", "lm", "model.matrix", "p.adjust", "phyper", "quantile") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... WARNING Missing link or links in documentation object 'barplotEnrich.Rd': '[DOSE]{barplot.enrichResult}' See section 'Cross-references' in the 'Writing R Extensions' manual. * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... WARNING LazyData DB of 10.5 MB without LazyDataCompression set See ยง1.1.6 of 'Writing R Extensions' * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed functionEnrich 228.68 8.42 241.81 ** running examples for arch 'x64' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed functionEnrich 214.06 3.72 222.18 * checking for unstated dependencies in vignettes ... NOTE '::' or ':::' import not declared from: 'BiocStyle' * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 WARNINGs, 3 NOTEs See 'C:/Users/biocbuild/bbs-3.13-bioc/meat/eegc.Rcheck/00check.log' for details.
eegc.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/eegc_1.18.0.tar.gz && rm -rf eegc.buildbin-libdir && mkdir eegc.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=eegc.buildbin-libdir eegc_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL eegc_1.18.0.zip && rm eegc_1.18.0.tar.gz eegc_1.18.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 2 9087k 2 221k 0 0 837k 0 0:00:10 --:--:-- 0:00:10 838k 37 9087k 37 3374k 0 0 2675k 0 0:00:03 0:00:01 0:00:02 2674k 81 9087k 81 7442k 0 0 3295k 0 0:00:02 0:00:02 --:--:-- 3295k 100 9087k 100 9087k 0 0 3497k 0 0:00:02 0:00:02 --:--:-- 3497k install for i386 * installing *source* package 'eegc' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'eegc' finding HTML links ... done SandlerFPKM html barplotEnrich html cate.gene html cate.ratio html categorizeGene html densityPlot html diffGene html diffgene.genes html dotPercentage html eegc html enrichment html expr.filter html functionEnrich html goenrich html grnPlot html heatmapPlot html human.gene html human.grn html human.tf html markerScatter html markers html mouse.gene html mouse.grn html mouse.tf html networkAnalyze html tissueGenes html tissueGroup html ** building package indices ** installing vignettes 'eegc.Rnw' ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'eegc' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'eegc' as eegc_1.18.0.zip * DONE (eegc) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'eegc' successfully unpacked and MD5 sums checked
eegc.Rcheck/examples_i386/eegc-Ex.timings
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eegc.Rcheck/examples_x64/eegc-Ex.timings
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