##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data dualKS
###
##############################################################################
##############################################################################


* checking for file ‘dualKS/DESCRIPTION’ ... OK
* preparing ‘dualKS’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘dualKS.rnw’ using Sweave
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated,
    append, as.data.frame, basename, cbind, colnames, dirname,
    do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, mapply, match, mget,
    order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
    rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit, which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages
    'citation("pkgname")'.

Loading required package: affy
Warning in if (class(eset) == "matrix") { :
  the condition has length > 1 and only the first element will be used
Warning in if (class(eset) == "matrix") { :
  the condition has length > 1 and only the first element will be used
Warning in if (class(eset) == "matrix") { :
  the condition has length > 1 and only the first element will be used
Warning in if (class(eset) == "matrix") { :
  the condition has length > 1 and only the first element will be used
Warning in if (class(eset) == "matrix") { :
  the condition has length > 1 and only the first element will be used

Error: processing vignette 'dualKS.rnw' failed with diagnostics:
 chunk 22 
Error in eval(expr, .GlobalEnv) : object 'pv.f' not found

--- failed re-building ‘dualKS.rnw’

SUMMARY: processing the following file failed:
  ‘dualKS.rnw’

Error: Vignette re-building failed.
Execution halted