Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:03 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the dmrseq package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/dmrseq.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 520/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
dmrseq 1.12.0 (landing page) Keegan Korthauer
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | WARNINGS | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |||||||||
Package: dmrseq |
Version: 1.12.0 |
Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:dmrseq.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings dmrseq_1.12.0.tar.gz |
StartedAt: 2021-10-14 22:27:04 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 22:42:07 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 902.3 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: dmrseq.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:dmrseq.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings dmrseq_1.12.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/dmrseq.Rcheck' * using R version 4.1.1 (2021-08-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'dmrseq/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'dmrseq' version '1.12.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'dmrseq' can be installed ... OK * checking installed package size ... NOTE installed size is 9.2Mb sub-directories of 1Mb or more: data 8.8Mb * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... WARNING LazyData DB of 8.8 MB without LazyDataCompression set See ยง1.1.6 of 'Writing R Extensions' * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed getAnnot 17.27 1.67 20.53 dmrseq 12.39 3.19 206.78 ** running examples for arch 'x64' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed getAnnot 18.19 0.87 20.48 dmrseq 13.00 2.81 216.92 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 1 NOTE See 'C:/Users/biocbuild/bbs-3.13-bioc/meat/dmrseq.Rcheck/00check.log' for details.
dmrseq.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/dmrseq_1.12.0.tar.gz && rm -rf dmrseq.buildbin-libdir && mkdir dmrseq.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=dmrseq.buildbin-libdir dmrseq_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL dmrseq_1.12.0.zip && rm dmrseq_1.12.0.tar.gz dmrseq_1.12.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 15 2288k 15 363k 0 0 1069k 0 0:00:02 --:--:-- 0:00:02 1070k 32 2288k 32 733k 0 0 501k 0 0:00:04 0:00:01 0:00:03 501k 90 2288k 90 2071k 0 0 866k 0 0:00:02 0:00:02 --:--:-- 867k 100 2288k 100 2288k 0 0 928k 0 0:00:02 0:00:02 --:--:-- 928k install for i386 * installing *source* package 'dmrseq' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Warning: replacing previous import 'AnnotationHub::hubUrl' by 'rtracklayer::hubUrl' when loading 'annotatr' ** help *** installing help indices converting help for package 'dmrseq' finding HTML links ... done BS.chr21 html annot.chr21 html dmrPlotAnnotations html dmrs.ex html dmrseq html getAnnot html meanDiff html plotDMRs html plotEmpiricalDistribution html simDMRs html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: replacing previous import 'AnnotationHub::hubUrl' by 'rtracklayer::hubUrl' when loading 'annotatr' ** testing if installed package can be loaded from final location Warning: replacing previous import 'AnnotationHub::hubUrl' by 'rtracklayer::hubUrl' when loading 'annotatr' ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'dmrseq' ... ** testing if installed package can be loaded Warning: replacing previous import 'AnnotationHub::hubUrl' by 'rtracklayer::hubUrl' when loading 'annotatr' * MD5 sums packaged installation of 'dmrseq' as dmrseq_1.12.0.zip * DONE (dmrseq) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'dmrseq' successfully unpacked and MD5 sums checked
dmrseq.Rcheck/examples_i386/dmrseq-Ex.timings
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dmrseq.Rcheck/examples_x64/dmrseq-Ex.timings
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