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This page was generated on 2021-10-15 15:06:02 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the decompTumor2Sig package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/decompTumor2Sig.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 457/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
decompTumor2Sig 2.8.0 (landing page) Rosario M. Piro
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: decompTumor2Sig |
Version: 2.8.0 |
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/decompTumor2Sig_2.8.0.tar.gz && rm -rf decompTumor2Sig.buildbin-libdir && mkdir decompTumor2Sig.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=decompTumor2Sig.buildbin-libdir decompTumor2Sig_2.8.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL decompTumor2Sig_2.8.0.zip && rm decompTumor2Sig_2.8.0.tar.gz decompTumor2Sig_2.8.0.zip |
StartedAt: 2021-10-14 10:45:44 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 10:48:00 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 135.8 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/decompTumor2Sig_2.8.0.tar.gz && rm -rf decompTumor2Sig.buildbin-libdir && mkdir decompTumor2Sig.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=decompTumor2Sig.buildbin-libdir decompTumor2Sig_2.8.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL decompTumor2Sig_2.8.0.zip && rm decompTumor2Sig_2.8.0.tar.gz decompTumor2Sig_2.8.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 24 2034k 24 507k 0 0 1150k 0 0:00:01 --:--:-- 0:00:01 1150k 100 2034k 100 2034k 0 0 1727k 0 0:00:01 0:00:01 --:--:-- 1729k install for i386 * installing *source* package 'decompTumor2Sig' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'decompTumor2Sig' finding HTML links ... done QPforSig html addBestSignatureToSubset html adjustAlexandrovSignature html adjustShiraishiSignature html adjustSignaturesForRegionSet html buildGenomesFromMutationData html buildSortedAlexandrovSignaturePatternList html compNucFreq html composeGenomesFromExposures html computeExplainedVariance html computeFrobeniusNorm html computeRSS html convAlx2Shi html convertAlexandrov2Shiraishi html convertGenomesFromVRanges html convertSeqFreqToBaseFreq html decompTumor2Sig-package html decomposeTumorGenomes html determineSignatureDistances html determineTypeNumBasesAndTrDir html downgradeShiraishiSignatures html evaluateDecompositionQuality html getBestDecomp4Ksignatures html getCountData html getFeatVectList html getGenomesFromMutFeatData html getNumFlankingBases html getNumSignatures html getSampleList html getSigFeatDist html getSigFromEstParam html getSigType html getSignaturesFromEstParam html haveTrDir html is.probability.data.frame html is.probability.data.frame.list html is.probability.matrix html is.probability.matrix.list html is.probability.object html is.probability.vector html is.probability.vector.list html isAlexandrovSet html isBackGround html isEstParamObject html isExposureSet html isMutFeatDataObject html isShiraishiSet html isSignatureSet html mapSignatureSets html plotAlexandrovModel html plotDecomposedContribution html plotExplainedVariance html plotMutationDistribution html plotShiraishiModel html processMultipleSigSets html readAlexandrovSignatures html readGenomesFromMPF html readGenomesFromVCF html readShiraishiSignatures html roundIntegerSum html sameSignatureFormat html setNames4ShiraishiTable html setNumFlankingBases html setSigFeatDist html setSigType html setTrDir html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'decompTumor2Sig' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'decompTumor2Sig' as decompTumor2Sig_2.8.0.zip * DONE (decompTumor2Sig) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'decompTumor2Sig' successfully unpacked and MD5 sums checked