Back to Multiple platform build/check report for BioC 3.13
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This page was generated on 2021-10-15 15:05:38 -0400 (Fri, 15 Oct 2021).

CHECK results for debrowser on nebbiolo1

To the developers/maintainers of the debrowser package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/debrowser.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 453/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
debrowser 1.20.1  (landing page)
Alper Kucukural
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/debrowser
git_branch: RELEASE_3_13
git_last_commit: 3379462
git_last_commit_date: 2021-08-11 22:11:22 -0400 (Wed, 11 Aug 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: debrowser
Version: 1.20.1
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:debrowser.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings debrowser_1.20.1.tar.gz
StartedAt: 2021-10-14 09:29:47 -0400 (Thu, 14 Oct 2021)
EndedAt: 2021-10-14 09:34:56 -0400 (Thu, 14 Oct 2021)
EllapsedTime: 309.1 seconds
RetCode: 0
Status:   OK  
CheckDir: debrowser.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:debrowser.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings debrowser_1.20.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.13-bioc/meat/debrowser.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘debrowser/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘debrowser’ version ‘1.20.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘debrowser’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
checkCountData : <anonymous>: no visible binding for global variable
  ‘err’
debrowserdataload: no visible binding for global variable ‘demodata’
debrowserhistogram: no visible global function definition for ‘config’
getBarMainPlot: no visible global function definition for ‘config’
getBoxMainPlot: no visible global function definition for ‘config’
getDensityPlot: no visible binding for global variable ‘samples’
getDensityPlot: no visible global function definition for ‘config’
getGOPlots: no visible global function definition for ‘facet_grid’
getIQRPlot: no visible global function definition for ‘config’
mainScatterNew: no visible global function definition for ‘config’
plot_pca: no visible binding for global variable ‘x’
plot_pca: no visible binding for global variable ‘y’
plot_pca: no visible binding for global variable ‘samples’
plot_pca: no visible global function definition for ‘config’
runHeatmap: no visible global function definition for ‘config’
Undefined global functions or variables:
  config demodata err facet_grid samples x y
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘test-demo.R’
  Running ‘test-deseq.R’
  Running ‘test-null.R’
  Running ‘test-ui.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.13-bioc/meat/debrowser.Rcheck/00check.log’
for details.

Installation output

debrowser.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL debrowser
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’
* installing *source* package ‘debrowser’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (debrowser)

Tests output

debrowser.Rcheck/tests/test-demo.Rout


R version 4.1.1 (2021-08-10) -- "Kick Things"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> require(shiny)
Loading required package: shiny
> library(debrowser)



##############################################################################
Pathview is an open source software package distributed under GNU General
Public License version 3 (GPLv3). Details of GPLv3 is available at
http://www.gnu.org/licenses/gpl-3.0.html. Particullary, users are required to
formally cite the original Pathview paper (not just mention it) in publications
or products. For details, do citation("pathview") within R.

The pathview downloads and uses KEGG data. Non-academic uses may require a KEGG
license agreement (details at http://www.kegg.jp/kegg/legal.html).
##############################################################################
DEBrowser v1.20.1  For help: https://debrowser.readthedocs.org/

If you use DEBrowser in published research, please cite:

Alper Kucukural, Onur Yukselen, Deniz M. Ozata, Melissa J. Moore, Manuel Garber
DEBrowser: Interactive Differential Expression Analysis and Visualization Tool for Count Data
BMC Genomics 2019 20:6

doi:0.1186/s12864-018-5362-x

> library(testthat)
> 
> test_that("demo data can be loaded", {
+     load(system.file("extdata", "demo", "demodata.Rda",
+         package = "debrowser"))
+     expect_true(is.data.frame(demodata))
+     expect_equal(demodata[29311, 2], 2)
+     expect_equal(demodata[29311, 5], 7.1)
+     expect_equal(demodata[29311, 6], 6)
+     expect_null(demodata[1, 7])
+ })
Test passed 😸
> 
> proc.time()
   user  system elapsed 
 11.662   0.619  12.270

debrowser.Rcheck/tests/test-deseq.Rout


R version 4.1.1 (2021-08-10) -- "Kick Things"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(debrowser)



##############################################################################
Pathview is an open source software package distributed under GNU General
Public License version 3 (GPLv3). Details of GPLv3 is available at
http://www.gnu.org/licenses/gpl-3.0.html. Particullary, users are required to
formally cite the original Pathview paper (not just mention it) in publications
or products. For details, do citation("pathview") within R.

The pathview downloads and uses KEGG data. Non-academic uses may require a KEGG
license agreement (details at http://www.kegg.jp/kegg/legal.html).
##############################################################################
DEBrowser v1.20.1  For help: https://debrowser.readthedocs.org/

If you use DEBrowser in published research, please cite:

Alper Kucukural, Onur Yukselen, Deniz M. Ozata, Melissa J. Moore, Manuel Garber
DEBrowser: Interactive Differential Expression Analysis and Visualization Tool for Count Data
BMC Genomics 2019 20:6

doi:0.1186/s12864-018-5362-x

> library(testthat)
> 
> load(system.file("extdata", "demo", "demodata.Rda",
+     package = "debrowser"))
> columns <- c("exper_rep1", "exper_rep2", "exper_rep3",
+     "control_rep1", "control_rep2", "control_rep3")
> conds <- factor( c("Control", "Control", "Control",
+     "Treat", "Treat", "Treat") )
> data <- data.frame(demodata[, columns])
> 
> #Run DESeq2 with the following parameters
> params <- c("DESeq2", "parametric", F, "Wald", "None") 
> non_expressed_cutoff <- 10
> data <- subset(data, rowSums(data) > 10)
> test_that("Able to run DESeq2", {
+     deseqrun <- runDE(data, columns, conds, params)
+     expect_true(exists("deseqrun"))
+ })
Test passed 🥳
> 
> ##################################################
> deseqrun <- runDE(data, columns, conds, params)
estimating size factors
estimating dispersions
gene-wise dispersion estimates
mean-dispersion relationship
final dispersion estimates
fitting model and testing
> 
> de_res <- data.frame(deseqrun)
> norm_data <- getNormalizedMatrix(data[, columns])
> rdata <- cbind(rownames(de_res), norm_data[rownames(de_res), columns],
+                 log10(rowMeans(norm_data[rownames(de_res),
+                 paste(c("exper_rep1", "exper_rep2", "exper_rep3"))])
+                 + 0.1), log10( rowMeans( norm_data[ rownames( de_res ),
+                 paste(c("control_rep1", "control_rep2", "control_rep3"))])
+                 + 0.1), de_res[rownames(de_res),
+                 c("padj", "log2FoldChange")], 2 ^ de_res[rownames(de_res),
+                 "log2FoldChange"], -1 *
+                 log10(de_res[rownames(de_res), "padj"]))
> colnames(rdata) <- c("ID", columns, "Cond1", "Cond2", "padj",
+                 "log2FoldChange", "foldChange", "log10padj")
> rdata <- as.data.frame(rdata)
> rdata$padj[is.na(rdata$padj)] <- 1
> 
> padj_cutoff <- 0.01
> foldChange_cutoff <- 2
> 
> rdata$Legend <- character(nrow(rdata))
> rdata$Legend[rdata$log2FoldChange > log2(foldChange_cutoff) &
+         rdata$padj < padj_cutoff] <- "Up"
> rdata$Legend[rdata$log2FoldChange < log2(1 / foldChange_cutoff) &
+         rdata$padj < padj_cutoff] <- "Down"
> rdata$Legend[abs(rdata$log2FoldChange) <= 
+         log2(foldChange_cutoff)] <- "NS"
> rdata$Legend[is.null(rdata$log10padj)] <- "NA"
> rdata$Size <- character(nrow(rdata))
> rdata[, "Size"] <- "40"
> 
> dat <- rdata
> dat$M <- rdata$Cond1 - rdata$Cond2
> dat$A <- (rdata$Cond1 + rdata$Cond2) / 2
> 
> updown <- rdata[rdata$Legend=="Up" | rdata$Legend=="Down",columns]
> ##################################################
> 
> test_that("Check the QC plots", {
+     expect_silent( all2all(data) )
+ })
Test passed 😸
> 
> 
> proc.time()
   user  system elapsed 
 32.814   0.986  33.785

debrowser.Rcheck/tests/test-null.Rout


R version 4.1.1 (2021-08-10) -- "Kick Things"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> require(shiny)
Loading required package: shiny
> library(debrowser)



##############################################################################
Pathview is an open source software package distributed under GNU General
Public License version 3 (GPLv3). Details of GPLv3 is available at
http://www.gnu.org/licenses/gpl-3.0.html. Particullary, users are required to
formally cite the original Pathview paper (not just mention it) in publications
or products. For details, do citation("pathview") within R.

The pathview downloads and uses KEGG data. Non-academic uses may require a KEGG
license agreement (details at http://www.kegg.jp/kegg/legal.html).
##############################################################################
DEBrowser v1.20.1  For help: https://debrowser.readthedocs.org/

If you use DEBrowser in published research, please cite:

Alper Kucukural, Onur Yukselen, Deniz M. Ozata, Melissa J. Moore, Manuel Garber
DEBrowser: Interactive Differential Expression Analysis and Visualization Tool for Count Data
BMC Genomics 2019 20:6

doi:0.1186/s12864-018-5362-x

> library(testthat)
> 
> test_that("passing no data returns NULL", {
+     expect_null(compareClust() )
+     expect_null(getGOPlots(NULL, NULL))
+     null_deseq <- runDE(NULL)
+     expect_null(null_deseq)
+     expect_null(plot_pca(NULL))
+ })
Test passed 🎊
> 
> proc.time()
   user  system elapsed 
 11.746   0.590  12.322

debrowser.Rcheck/tests/test-ui.Rout


R version 4.1.1 (2021-08-10) -- "Kick Things"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> require(shiny)
Loading required package: shiny
> library(debrowser)



##############################################################################
Pathview is an open source software package distributed under GNU General
Public License version 3 (GPLv3). Details of GPLv3 is available at
http://www.gnu.org/licenses/gpl-3.0.html. Particullary, users are required to
formally cite the original Pathview paper (not just mention it) in publications
or products. For details, do citation("pathview") within R.

The pathview downloads and uses KEGG data. Non-academic uses may require a KEGG
license agreement (details at http://www.kegg.jp/kegg/legal.html).
##############################################################################
DEBrowser v1.20.1  For help: https://debrowser.readthedocs.org/

If you use DEBrowser in published research, please cite:

Alper Kucukural, Onur Yukselen, Deniz M. Ozata, Melissa J. Moore, Manuel Garber
DEBrowser: Interactive Differential Expression Analysis and Visualization Tool for Count Data
BMC Genomics 2019 20:6

doi:0.1186/s12864-018-5362-x

> library(testthat)
> 
> test_that("able to create panel UI", {
+     expect_silent( QCPanel <- getQCPanel() )
+     expect_true(exists("QCPanel"))
+     expect_equal(QCPanel[[1]][[1]], "div")
+ 
+     expect_silent( downloads <- getDownloadSection() )
+     expect_true(exists("downloads"))
+     expect_equal(downloads[[1]][[1]], "div")
+ 
+     expect_silent( getMain <- getMainPanel() )
+     expect_true(exists("getMain"))
+     expect_equal(getMain[[1]][[1]], "div")
+ 
+     expect_silent( getStart <- getStartupMsg() )
+     expect_true(exists("getStart"))
+     expect_equal(getStart[[1]][[1]], "div")
+ 
+     expect_silent( getAfter <- getAfterLoadMsg() )
+     expect_true(exists("getAfter"))
+     expect_equal(getAfter[[1]][[1]], "div")
+ 
+     expect_silent(getGO <- getGoPanel() )
+     expect_true(exists("getGO"))
+     expect_equal(getGO[[1]][[1]], "div")
+ })
Test passed 🎉
> 
> proc.time()
   user  system elapsed 
 12.938   0.790  13.714

Example timings

debrowser.Rcheck/debrowser-Ex.timings

nameusersystemelapsed
BoxMainPlotControlsUI0.0310.0040.035
IQRPlotControlsUI0.0010.0000.001
actionButtonDE0.0050.0010.004
addDataCols0.0010.0000.000
addID0.0010.0000.000
all2all0.1250.0110.137
all2allControlsUI0.0280.0040.032
applyFilters0.0010.0000.001
applyFiltersNew0.0010.0000.000
applyFiltersToMergedComparison0.0010.0010.000
barMainPlotControlsUI0.0020.0000.001
batchEffectUI0.0460.0040.049
batchMethod0.0000.0020.001
changeClusterOrder0.0000.0010.000
checkCountData0.0000.0010.000
checkMetaData0.0000.0010.000
clustFunParamsUI0.0000.0010.000
clusterData0.0000.0010.000
compareClust0.0000.0010.000
condSelectUI0.0010.0030.004
correctCombat000
correctHarman000
customColorsUI0.0070.0010.006
cutOffSelectionUI0.0030.0000.003
dataLCFUI0.0140.0030.018
dataLoadUI0.0110.0040.015
deServer0.0050.0040.009
deUI0.1330.0130.145
debrowserIQRplot000
debrowserall2all000
debrowserbarmainplot0.0010.0000.000
debrowserbatcheffect0.0010.0000.000
debrowserboxmainplot000
debrowsercondselect0.0010.0000.000
debrowserdataload0.0010.0000.000
debrowserdeanalysis000
debrowserdensityplot0.0010.0000.000
debrowserheatmap0.0010.0000.000
debrowserhistogram0.0010.0000.000
debrowserlowcountfilter0.0010.0000.000
debrowsermainplot000
debrowserpcaplot000
dendControlsUI0.0040.0000.005
densityPlotControlsUI0.0010.0000.001
distFunParamsUI000
drawKEGG0.0010.0000.000
drawPCAExplained000
fileTypes0.0000.0000.001
fileUploadBox0.0000.0020.003
generateTestData0.0000.0010.001
getAfterLoadMsg0.0000.0010.000
getAll2AllPlotUI0.0000.0010.000
getBSTableUI000
getBarMainPlot0.0000.0000.001
getBarMainPlotUI0.0000.0000.001
getBoxMainPlot0.0000.0000.001
getBoxMainPlotUI0.0000.0000.001
getColorShapeSelection000
getColors0.0000.0010.000
getCompSelection0.0000.0020.001
getCondMsg000
getConditionSelector000
getConditionSelectorFromMeta0.0020.0000.001
getCutOffSelection0.0020.0010.001
getDEAnalysisText0.0020.0000.001
getDEResultsUI0.0020.0000.001
getDataAssesmentText0.0020.0000.001
getDataForTables0.0000.0000.001
getDataPreparationText0.0000.0010.001
getDensityPlot000
getDensityPlotUI000
getDomains0.0000.0010.000
getDown0.0000.0000.001
getDownloadSection0.0050.0000.006
getEnrichDO0.0000.0000.001
getEnrichGO0.0000.0000.001
getEnrichKEGG000
getEntrezIds0.0010.0000.000
getEntrezTable0.0010.0000.000
getGOLeftMenu0.0070.0000.007
getGOPlots000
getGSEA000
getGeneList0.4020.0410.443
getGeneSetData0.0010.0000.000
getGoPanel0.0130.0030.018
getHeatmapUI0.0000.0000.001
getHelpButton0.0000.0000.001
getHideLegendOnOff0.0000.0010.002
getHistogramUI000
getIQRPlot0.0000.0010.001
getIQRPlotUI000
getIntroText0.0000.0020.001
getJSLine0.0000.0010.001
getKEGGModal0.0020.0000.002
getLeftMenu000
getLegendColors0.0010.0000.001
getLegendRadio0.0020.0000.002
getLegendSelect0.0010.0000.002
getLevelOrder000
getLoadingMsg0.0000.0010.002
getLogo0.0000.0010.001
getMainPanel0.0000.0000.001
getMainPlotUI0.0000.0000.001
getMainPlotsLeftMenu0.0520.0000.053
getMean0.0000.0000.001
getMergedComparison0.0000.0000.001
getMetaSelector000
getMethodDetails0.0010.0000.001
getMostVariedList0.0010.0000.000
getNormalizedMatrix0.0150.0000.014
getOrganism0.0000.0000.001
getOrganismBox0.0020.0000.003
getOrganismPathway0.0010.0000.000
getPCAPlotUI0.0010.0000.000
getPCAcontolUpdatesJS0.0010.0000.000
getPCAexplained1.7510.0311.785
getPCselection0.0010.0010.001
getPlotArea0.0010.0000.001
getProgramTitle0.0010.0000.000
getQAText0.0010.0000.001
getQCLeftMenu0.0000.0000.001
getQCPanel0.0020.0000.003
getSampleDetails0.0000.0000.001
getSampleNames0.0000.0000.001
getSamples000
getSearchData0.0010.0000.000
getSelHeat0.0010.0000.000
getSelectInputBox000
getSelectedCols000
getSelectedDatasetInput0.0000.0000.001
getShapeColor000
getStartPlotsMsg0.0030.0000.002
getStartupMsg0.0020.0000.002
getTabUpdateJS0.0000.0000.001
getTableDetails0.0000.0000.001
getTableModal0.0060.0000.007
getTableStyle000
getTextOnOff0.0010.0000.001
getUp000
getUpDown0.0000.0000.001
getVariationData0.0000.0000.001
get_conditions_given_selection000
heatmapControlsUI0.0230.0040.026
heatmapJScode000
heatmapServer0.0010.0000.001
heatmapUI0.0510.0000.052
hideObj0.0000.0000.001
histogramControlsUI0.0000.0000.001
installpack0.0000.0000.001
kmeansControlsUI0.0030.0000.004
lcfMetRadio0.0020.0000.002
loadpack0.0130.0160.030
mainPlotControlsUI0.0050.0000.005
mainScatterNew0.0000.0000.001
niceKmeans0.0010.0000.000
normalizationMethods0.0020.0000.001
palUI0.0000.0010.002
panel.cor0.0000.0010.001
panel.hist0.0010.0010.001
pcaPlotControlsUI0.0050.0000.004
plotData0.0010.0000.000
plotMarginsUI0.0030.0000.003
plotSizeMarginsUI0.0060.0000.006
plotSizeUI0.0020.0000.002
plotTypeUI0.0010.0000.000
plot_pca0.6930.0200.712
prepDEOutput0.0010.0000.000
prepDataContainer0.0010.0000.000
prepGroup0.0010.0000.000
prepHeatData0.0010.0000.000
prepPCADat000
push0.0000.0000.001
removeCols000
removeExtraCols0.0020.0000.001
round_vals0.0010.0000.000
runDE000
runDESeq20.0000.0010.000
runEdgeR0.0000.0010.000
runHeatmap0.0000.0010.000
runHeatmap20.0010.0000.000
runLimma0.0010.0000.000
run_pca0.6120.0000.612
selectConditions0.0010.0000.000
selectGroupInfo0.0010.0000.000
selectedInput000
sepRadio0.0020.0000.002
setBatch0.0000.0000.001
showObj0.0000.0000.001
startDEBrowser0.0010.0000.000
startHeatmap0.0010.0000.000
textareaInput0.0010.0000.000
togglePanels0.0010.0000.000