Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:05:59 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the categoryCompare package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/categoryCompare.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 246/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
categoryCompare 1.36.0 (landing page) Robert M. Flight
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: categoryCompare |
Version: 1.36.0 |
Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:categoryCompare.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings categoryCompare_1.36.0.tar.gz |
StartedAt: 2021-10-14 20:39:56 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 20:44:36 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 279.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: categoryCompare.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:categoryCompare.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings categoryCompare_1.36.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/categoryCompare.Rcheck' * using R version 4.1.1 (2021-08-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'categoryCompare/DESCRIPTION' ... OK * this is package 'categoryCompare' version '1.36.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'categoryCompare' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE .ccCompareGO: no visible binding for global variable 'GOBPPARENTS' .ccCompareGO: no visible binding for global variable 'GOMFPARENTS' .ccCompareGO: no visible binding for global variable 'GOCCPARENTS' .ccCompareGO: no visible binding for global variable 'GOTERM' .ccCompareGO: no visible binding for global variable 'Term' .cytOutNodes: ... may be used in an incorrect context: exportImage(filename = fileName, type = "png", network = cwObj, ...) .getDesc : <anonymous>: no visible global function definition for 'Term' show,HyperGResultCC: no visible global function definition for 'description' Undefined global functions or variables: GOBPPARENTS GOCCPARENTS GOMFPARENTS GOTERM Term description * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'C:/Users/biocbuild/bbs-3.13-bioc/meat/categoryCompare.Rcheck/00check.log' for details.
categoryCompare.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/categoryCompare_1.36.0.tar.gz && rm -rf categoryCompare.buildbin-libdir && mkdir categoryCompare.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=categoryCompare.buildbin-libdir categoryCompare_1.36.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL categoryCompare_1.36.0.zip && rm categoryCompare_1.36.0.tar.gz categoryCompare_1.36.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 21 1767k 21 376k 0 0 1050k 0 0:00:01 --:--:-- 0:00:01 1049k 100 1767k 100 1767k 0 0 1934k 0 --:--:-- --:--:-- --:--:-- 1933k install for i386 * installing *source* package 'categoryCompare' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading Note: ... may be used in an incorrect context ** help *** installing help indices converting help for package 'categoryCompare' finding HTML links ... done GENccEnrichResult-class html finding level-2 HTML links ... done HyperGParamsCC-class html HyperGResultCC-class html breakEdges-methods html categoryCompare-package html ccCompare html ccCompareCollection-class html ccCompareGeneric-methods html ccCompareResult-class html ccData html ccEnrich html ccEnrichCollection-class html ccEnrichResult-class html ccGeneList-class html ccOptions-class html ccOutCyt-methods html ccSigList-class html cwReload-methods html cytOutData-methods html cytOutNodes-methods html fdr html getGeneSymbol html graphType-methods html hyperGTestCC html listNames html mergeLists-methods html mergedData-class html minCount html minNodes html pvalueType html resetColors-methods html show-methods html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'categoryCompare' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'categoryCompare' as categoryCompare_1.36.0.zip * DONE (categoryCompare) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'categoryCompare' successfully unpacked and MD5 sums checked
categoryCompare.Rcheck/examples_i386/categoryCompare-Ex.timings
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categoryCompare.Rcheck/examples_x64/categoryCompare-Ex.timings
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