| Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:05:58 -0400 (Fri, 15 Oct 2021).
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To the developers/maintainers of the biomformat package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biomformat.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 181/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| biomformat 1.20.0 (landing page) Paul J. McMurdie
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | WARNINGS |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: biomformat |
| Version: 1.20.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/biomformat_1.20.0.tar.gz && rm -rf biomformat.buildbin-libdir && mkdir biomformat.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=biomformat.buildbin-libdir biomformat_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL biomformat_1.20.0.zip && rm biomformat_1.20.0.tar.gz biomformat_1.20.0.zip |
| StartedAt: 2021-10-14 07:18:49 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 07:19:40 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 51.4 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/biomformat_1.20.0.tar.gz && rm -rf biomformat.buildbin-libdir && mkdir biomformat.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=biomformat.buildbin-libdir biomformat_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL biomformat_1.20.0.zip && rm biomformat_1.20.0.tar.gz biomformat_1.20.0.zip
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install for i386
* installing *source* package 'biomformat' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for 'nrow' from package 'base' in package 'biomformat'
Creating a generic function for 'ncol' from package 'base' in package 'biomformat'
Creating a generic function for 'rownames' from package 'base' in package 'biomformat'
Creating a generic function for 'colnames' from package 'base' in package 'biomformat'
** help
*** installing help indices
converting help for package 'biomformat'
finding HTML links ... done
biom-class html
biom-methods html
finding level-2 HTML links ... done
biom-package html
biom_data-methods html
Rd warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpUl3Fcr/R.INSTALL10fc1eb452c/biomformat/man/biom_data-methods.Rd:46: missing link 'plyr-package'
biom_shape-methods html
colnames-methods html
header-methods html
make_biom html
matrix_element_type-methods html
ncol-methods html
nrow-methods html
observation_metadata-methods html
Rd warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpUl3Fcr/R.INSTALL10fc1eb452c/biomformat/man/observation_metadata-methods.Rd:30: missing link 'plyr-package'
read_biom html
read_hdf5_biom html
rownames-methods html
sample_metadata-methods html
Rd warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpUl3Fcr/R.INSTALL10fc1eb452c/biomformat/man/sample_metadata-methods.Rd:30: missing link 'plyr-package'
show-methods html
write_biom html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'biomformat' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'biomformat' as biomformat_1.20.0.zip
* DONE (biomformat)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'biomformat' successfully unpacked and MD5 sums checked