Back to Multiple platform build/check report for BioC 3.13
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This page was generated on 2021-10-15 15:05:58 -0400 (Fri, 15 Oct 2021).

BUILD BIN results for bioCancer on tokay2

To the developers/maintainers of the bioCancer package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/bioCancer.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 157/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
bioCancer 1.20.02  (landing page)
Karim Mezhoud
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/bioCancer
git_branch: RELEASE_3_13
git_last_commit: 19fc7ba
git_last_commit_date: 2021-06-30 07:34:37 -0400 (Wed, 30 Jun 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: bioCancer
Version: 1.20.02
Command: rm -rf bioCancer.buildbin-libdir && mkdir bioCancer.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=bioCancer.buildbin-libdir bioCancer_1.20.02.tar.gz
StartedAt: 2021-10-15 08:12:50 -0400 (Fri, 15 Oct 2021)
EndedAt: 2021-10-15 08:14:26 -0400 (Fri, 15 Oct 2021)
EllapsedTime: 95.6 seconds
RetCode: 0
Status:   OK  
PackageFile: bioCancer_1.20.02.zip
PackageFileSize: 6.551 MiB

Command output

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###
### Running command:
###
###   rm -rf bioCancer.buildbin-libdir && mkdir bioCancer.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=bioCancer.buildbin-libdir bioCancer_1.20.02.tar.gz
###
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install for i386

* installing *source* package 'bioCancer' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'bioCancer'
    finding HTML links ... done
    AnnotationFuncs-package                 html  
    Edges_Diseases_obj                      html  
    Mutation_obj                            html  
    Node_Diseases_obj                       html  
    Node_df_FreqIn                          html  
    Node_obj_CNA_ProfData                   html  
    Node_obj_FreqIn                         html  
    Node_obj_Met_ProfData                   html  
    Node_obj_mRNA_Classifier                html  
    Studies_obj                             html  
    UnifyRowNames                           html  
    attriColorGene                          html  
    attriColorValue                         html  
    attriColorVector                        html  
    attriShape2Gene                         html  
    attriShape2Node                         html  
    bioCancer                               html  
    checkDimensions                         html  
    coffeewheel                             html  
    coffeewheelOutput                       html  
    displayTable                            html  
    dot-dbEscapeString                      html  
    dot-getTableName                        html  
    dot-pickRef                             html  
    epiGenomics                             html  
    findPhantom                             html  
    getEvidenceCodes                        html  
    getFreqMutData                          html  
    getGenesClassification                  html  
    getListProfData                         html  
    getList_Cases                           html  
    getList_GenProfs                        html  
    getMegaProfData                         html  
    getOrthologs                            html  
    getSequensed_SampleSize                 html  
    grepRef                                 html  
    mapLists                                html  
    metabologram                            html  
    metabologramOutput                      html  
    pickGO                                  html  
    pickRefSeq                              html  
    reStrColorGene                          html  
    reStrDimension                          html  
    reStrDisease                            html  
    removeNAs                               html  
    renderCoffeewheel                       html  
    renderMetabologram                      html  
    returnTextAreaInput                     html  
    switchButton                            html  
    translate                               html  
    user_CNA                                html  
    user_MetHM27                            html  
    user_MetHM450                           html  
    user_Mut                                html  
    user_mRNA                               html  
    whichGeneList                           html  
    widgetThumbnail                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'bioCancer' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'bioCancer' as bioCancer_1.20.02.zip
* DONE (bioCancer)