Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:05:58 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the barcodetrackR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/barcodetrackR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 117/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
barcodetrackR 1.0.0 (landing page) Diego Alexander Espinoza
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: barcodetrackR |
Version: 1.0.0 |
Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:barcodetrackR.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings barcodetrackR_1.0.0.tar.gz |
StartedAt: 2021-10-14 19:49:28 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 19:54:00 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 271.9 seconds |
RetCode: 0 |
Status: OK |
CheckDir: barcodetrackR.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:barcodetrackR.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings barcodetrackR_1.0.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/barcodetrackR.Rcheck' * using R version 4.1.1 (2021-08-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'barcodetrackR/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'barcodetrackR' version '1.0.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'barcodetrackR' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed barcode_stat_test 5.5 0 5.5 ** running examples for arch 'x64' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed barcode_stat_test 6.05 0 6.04 * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'testthat.R' OK ** running tests for arch 'x64' ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
barcodetrackR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/barcodetrackR_1.0.0.tar.gz && rm -rf barcodetrackR.buildbin-libdir && mkdir barcodetrackR.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=barcodetrackR.buildbin-libdir barcodetrackR_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL barcodetrackR_1.0.0.zip && rm barcodetrackR_1.0.0.tar.gz barcodetrackR_1.0.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 74 1068k 74 791k 0 0 1189k 0 --:--:-- --:--:-- --:--:-- 1189k 100 1068k 100 1068k 0 0 1372k 0 --:--:-- --:--:-- --:--:-- 1372k install for i386 * installing *source* package 'barcodetrackR' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'barcodetrackR' finding HTML links ... done barcode_binary_heatmap html barcode_ggheatmap html barcode_ggheatmap_stat html barcode_stat_test html bias_histogram html bias_lineplot html bias_ridge_plot html build_index_html html chord_diagram html clonal_contribution html clonal_count html clonal_diversity html cor_plot html create_SE html dist_plot html estimate_barcode_threshold html get_top_clones html launchApp html mds_plot html rank_abundance_plot html rank_abundance_stat_test html scatter_plot html stat_hist html subset_SE html threshold html threshold_SE html wu_subset html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'barcodetrackR' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'barcodetrackR' as barcodetrackR_1.0.0.zip * DONE (barcodetrackR) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'barcodetrackR' successfully unpacked and MD5 sums checked
barcodetrackR.Rcheck/tests_i386/testthat.Rout R version 4.1.1 (2021-08-10) -- "Kick Things" Copyright (C) 2021 The R Foundation for Statistical Computing Platform: i386-w64-mingw32/i386 (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(barcodetrackR) > > test_check("barcodetrackR") No threshold supplied. All barcodes will be retained. Be aware that lower abundance barcodes are likely to be less reliable due to sampling bias. To estimate an appropriate threshold, please see the barcodetrackR function `estimate_barcode_threshold`. No threshold supplied. All barcodes will be retained. Be aware that lower abundance barcodes are likely to be less reliable due to sampling bias. To estimate an appropriate threshold, please see the barcodetrackR function `estimate_barcode_threshold`. Removed 0 barcodes from the supplied dataframe based on relative threshold of 1e-07 Removed 0 barcodes from the supplied dataframe based on relative threshold of 1e-07 Removed 71 barcodes from the supplied dataframe based on relative threshold of 0.005 Removed 71 barcodes from the supplied dataframe based on relative threshold of 0.005 [ FAIL 0 | WARN 4 | SKIP 0 | PASS 31 ] > > proc.time() user system elapsed 14.32 1.15 15.46 |
barcodetrackR.Rcheck/tests_x64/testthat.Rout R version 4.1.1 (2021-08-10) -- "Kick Things" Copyright (C) 2021 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(barcodetrackR) > > test_check("barcodetrackR") No threshold supplied. All barcodes will be retained. Be aware that lower abundance barcodes are likely to be less reliable due to sampling bias. To estimate an appropriate threshold, please see the barcodetrackR function `estimate_barcode_threshold`. No threshold supplied. All barcodes will be retained. Be aware that lower abundance barcodes are likely to be less reliable due to sampling bias. To estimate an appropriate threshold, please see the barcodetrackR function `estimate_barcode_threshold`. Removed 0 barcodes from the supplied dataframe based on relative threshold of 1e-07 Removed 0 barcodes from the supplied dataframe based on relative threshold of 1e-07 Removed 71 barcodes from the supplied dataframe based on relative threshold of 0.005 Removed 71 barcodes from the supplied dataframe based on relative threshold of 0.005 [ FAIL 0 | WARN 4 | SKIP 0 | PASS 31 ] > > proc.time() user system elapsed 16.20 0.51 16.70 |
barcodetrackR.Rcheck/examples_i386/barcodetrackR-Ex.timings
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barcodetrackR.Rcheck/examples_x64/barcodetrackR-Ex.timings
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