Aditya Bhagwat
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/autonomics |
| git_branch: RELEASE_3_13 |
| git_last_commit: 5df16f7 |
| git_last_commit_date: 2021-05-25 07:57:21 -0400 (Tue, 25 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:05:58 -0400 (Fri, 15 Oct 2021).
|
To the developers/maintainers of the autonomics package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/autonomics.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 102/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| autonomics 1.0.1 (landing page) Aditya Bhagwat
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | ERROR | OK | |||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: autonomics |
| Version: 1.0.1 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/autonomics_1.0.1.tar.gz && rm -rf autonomics.buildbin-libdir && mkdir autonomics.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=autonomics.buildbin-libdir autonomics_1.0.1.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL autonomics_1.0.1.zip && rm autonomics_1.0.1.tar.gz autonomics_1.0.1.zip |
| StartedAt: 2021-10-14 09:47:33 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 09:49:13 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 99.4 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/autonomics_1.0.1.tar.gz && rm -rf autonomics.buildbin-libdir && mkdir autonomics.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=autonomics.buildbin-libdir autonomics_1.0.1.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL autonomics_1.0.1.zip && rm autonomics_1.0.1.tar.gz autonomics_1.0.1.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
2 9411k 2 222k 0 0 723k 0 0:00:13 --:--:-- 0:00:13 723k
46 9411k 46 4409k 0 0 3416k 0 0:00:02 0:00:01 0:00:01 3415k
100 9411k 100 9411k 0 0 4202k 0 0:00:02 0:00:02 --:--:-- 4205k
install for i386
* installing *source* package 'autonomics' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Note: wrong number of arguments to '/'
** help
*** installing help indices
converting help for package 'autonomics'
finding HTML links ... done
AUTONOMICS_DATASETS html
MAXQUANT_PATTERNS_PEPCOUNTS html
MAXQUANT_PATTERNS_QUANTITY html
TESTS html
add_smiles html
analysis html
analyze html
assert_is_valid_sumexp html
biplot html
biplot_corrections html
biplot_covariates html
center html
contrast_subgroup_cols html
contrastdefs html
counts html
counts2cpm html
counts2tpm html
cpm html
create_design html
create_sfile html
default_formula html
default_sfile html
download_data html
download_gtf html
dt2mat html
explore_imputations html
explore_transformations html
extract_features html
extract_rectangle html
fdata html
filter_exprs_replicated_in_some_subgroup
html
filter_features html
filter_medoid html
filter_replicated html
filter_samples html
fit_limma html
flevels html
fnames html
formula2str html
fvalues html
fvars html
guess_maxquant_quantity html
guess_sep html
halfnormimpute html
impute_systematic_nondetects html
invert html
is_imputed html
is_sig html
limma html
log2counts html
log2countsratios html
log2cpm html
log2cpmratios html
log2tpm html
log2tpmratios html
log2transform html
make_volcano_dt html
matrix2sumexp html
merge_sdata html
merge_sfile html
message_df html
occupancies html
pca html
plot_boxplots html
plot_contrastogram html
plot_data html
plot_densities html
plot_detections html
plot_features html
plot_venn html
plot_violins html
plot_volcano html
preprocess_rnaseq_counts html
proteingroups html
read_affymetrix html
read_metabolon html
read_proteingroups html
read_rectangles html
read_rnaseq_counts html
read_somascan html
rm_singleton_samples html
scaledlibsizes html
sdata html
slevels html
snames html
split_by_svar html
split_extract html
standardize_maxquant_snames html
subgroup_matrix html
subtract_baseline html
sumexp2mae html
sumexp_to_long_dt html
summarize_fit html
svalues html
svars html
tpm html
values html
venn_detects html
weights html
zero_to_na html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'autonomics' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'autonomics' as autonomics_1.0.1.zip
* DONE (autonomics)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'autonomics' successfully unpacked and MD5 sums checked