Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:28 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the anota2seq package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/anota2seq.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 71/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
anota2seq 1.14.0 (landing page) Christian Oertlin
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: anota2seq |
Version: 1.14.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:anota2seq.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings anota2seq_1.14.0.tar.gz |
StartedAt: 2021-10-14 16:17:31 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 16:23:35 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 363.9 seconds |
RetCode: 0 |
Status: OK |
CheckDir: anota2seq.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:anota2seq.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings anota2seq_1.14.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.13-bioc/meat/anota2seq.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘anota2seq/DESCRIPTION’ ... OK * this is package ‘anota2seq’ version ‘1.14.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .git_fetch_output.txt .git_merge_output.txt These were most likely included in error. See section ‘Package structure’ in the ‘Writing R Extensions’ manual. * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘anota2seq’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed anota2seqGetQualityControl 57.283 0.232 57.555 anota2seqGetResidOutlierTest 56.068 0.254 56.395 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.13-bioc/meat/anota2seq.Rcheck/00check.log’ for details.
anota2seq.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL anota2seq ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’ * installing *source* package ‘anota2seq’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (anota2seq)
anota2seq.Rcheck/anota2seq-Ex.timings
name | user | system | elapsed | |
anota2seq-plots | 0.000 | 0.001 | 0.001 | |
anota2seqAnalyze | 1.404 | 0.069 | 1.480 | |
anota2seqDataSetFromMatrix | 0.101 | 0.004 | 0.105 | |
anota2seqGetContrasts | 0.991 | 0.014 | 1.006 | |
anota2seqGetCovariates | 1.475 | 0.016 | 1.491 | |
anota2seqGetDeltaData | 0.711 | 0.018 | 0.729 | |
anota2seqGetNormalizedData | 0.060 | 0.004 | 0.064 | |
anota2seqGetOutput | 0.712 | 0.005 | 0.718 | |
anota2seqGetQualityControl | 57.283 | 0.232 | 57.555 | |
anota2seqGetResidOutlierTest | 56.068 | 0.254 | 56.395 | |
anota2seqGetThresholds | 0.723 | 0.010 | 0.735 | |
anota2seqPerformQC | 0 | 0 | 0 | |
anota2seqRegModes | 1.995 | 0.031 | 2.029 | |
anota2seqResidOutlierTest | 0.000 | 0.001 | 0.001 | |
anota2seqRun | 1.955 | 0.017 | 1.975 | |
anota2seqSelSigGenes | 0.787 | 0.009 | 0.796 | |
anota2seq_data | 0.025 | 0.004 | 0.028 | |
show-Anota2seqDataSet-method | 0.148 | 0.005 | 0.154 | |