Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:05:57 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the amplican package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/amplican.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 53/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
amplican 1.14.0 (landing page) Eivind Valen
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: amplican |
Version: 1.14.0 |
Command: rm -rf amplican.buildbin-libdir && mkdir amplican.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=amplican.buildbin-libdir amplican_1.14.0.tar.gz |
StartedAt: 2021-10-15 07:58:56 -0400 (Fri, 15 Oct 2021) |
EndedAt: 2021-10-15 08:00:11 -0400 (Fri, 15 Oct 2021) |
EllapsedTime: 74.5 seconds |
RetCode: 0 |
Status: OK |
PackageFile: amplican_1.14.0.zip |
PackageFileSize: 6.005 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf amplican.buildbin-libdir && mkdir amplican.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=amplican.buildbin-libdir amplican_1.14.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'amplican' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"c:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"c:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c bezier.cpp -o bezier.o C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o amplican.dll tmp.def RcppExports.o bezier.o -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/amplican.buildbin-libdir/00LOCK-amplican/00new/amplican/libs/i386 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'amplican' finding HTML links ... done AlignmentsExperimentSet-class html finding level-2 HTML links ... done alphabetQuality html amplican html amplicanAlign html amplicanConsensus html amplicanFilter html amplicanMap html amplicanNormalize html amplicanOverlap html amplicanPipeline html amplicanPipelineConservative html amplicanReport html amplicanSummarize html amplican_print_reads html assignedCount html barcodeData-set html barcodeData html checkConfigFile html checkFileWriteAccess html checkPrimers html checkTarget html cigarsToEvents html comb_along html cumsumw html decode html defGR html experimentData-set html experimentData html extractEvents html findEOP html findLQR html findPD html flipRanges html fwdReads-set html fwdReads html fwdReadsType-set html fwdReadsType html geom_bezier html getEventInfo html getEvents html get_amplicon html get_left_primer html get_right_primer html goodAvgQuality html goodBaseQuality html lookupAlignment html makeAlignment html metaplot_deletions html metaplot_insertions html metaplot_mismatches html pairToEvents html plot_amplicon html plot_cuts html plot_deletions html plot_height html plot_heterogeneity html plot_insertions html plot_mismatches html plot_variants html readCounts-set html readCounts html revComp html rveReads-set html rveReads html rveReadsType-set html rveReadsType html unassignedCount html unassignedData-set html unassignedData html upperGroups html writeAlignments html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'amplican' ... ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c bezier.cpp -o bezier.o C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o amplican.dll tmp.def RcppExports.o bezier.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/amplican.buildbin-libdir/amplican/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'amplican' as amplican_1.14.0.zip * DONE (amplican)