Peter Dimitrov
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/aCGH |
| git_branch: RELEASE_3_13 |
| git_last_commit: e412576 |
| git_last_commit_date: 2021-05-19 11:34:31 -0400 (Wed, 19 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:05:56 -0400 (Fri, 15 Oct 2021).
|
To the developers/maintainers of the aCGH package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/aCGH.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 13/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| aCGH 1.70.0 (landing page) Peter Dimitrov
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: aCGH |
| Version: 1.70.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/aCGH_1.70.0.tar.gz && rm -rf aCGH.buildbin-libdir && mkdir aCGH.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=aCGH.buildbin-libdir aCGH_1.70.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL aCGH_1.70.0.zip && rm aCGH_1.70.0.tar.gz aCGH_1.70.0.zip |
| StartedAt: 2021-10-14 07:40:16 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 07:41:46 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 90.6 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/aCGH_1.70.0.tar.gz && rm -rf aCGH.buildbin-libdir && mkdir aCGH.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=aCGH.buildbin-libdir aCGH_1.70.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL aCGH_1.70.0.zip && rm aCGH_1.70.0.tar.gz aCGH_1.70.0.zip
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install for i386
* installing *source* package 'aCGH' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -DUSEDOUBLE -g3 -I"c:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c hmm.cpp -o hmm.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o aCGH.dll tmp.def hmm.o -lm -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/aCGH.buildbin-libdir/00LOCK-aCGH/00new/aCGH/libs/i386
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'aCGH'
finding HTML links ... done
aCGH html
aCGH.process html
aCGH.read.Sprocs html
aCGH.test html
clusterGenome html
colorectal html
computeSD.func html
fga.func html
find.genomic.events html
find.hmm.states html
findAber.func html
findAmplif.func html
findOutliers.func html
findTrans.func html
gainLoss html
heatmap html
human.chrom.info.Jul03 html
human.chrom.info.May04 html
impute.HMM html
impute.lowess html
mergeFunc html
mergeLevels html
plotFreqStat html
plotGenome html
plotHmmStates html
plotSummaryProfile html
states.hmm.func html
summarize.clones html
threshold.func html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'aCGH' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -DUSEDOUBLE -g3 -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c hmm.cpp -o hmm.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o aCGH.dll tmp.def hmm.o -lm -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/aCGH.buildbin-libdir/aCGH/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'aCGH' as aCGH_1.70.0.zip
* DONE (aCGH)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'aCGH' successfully unpacked and MD5 sums checked