Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:27 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the YAPSA package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/YAPSA.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 2035/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
YAPSA 1.18.0 (landing page) Daniel Huebschmann
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | ERROR | skipped | skipped | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | ERROR | skipped | skipped | |||||||||
Package: YAPSA |
Version: 1.18.0 |
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/YAPSA_1.18.0.tar.gz && rm -rf YAPSA.buildbin-libdir && mkdir YAPSA.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=YAPSA.buildbin-libdir YAPSA_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL YAPSA_1.18.0.zip && rm YAPSA_1.18.0.tar.gz YAPSA_1.18.0.zip |
StartedAt: 2021-10-14 11:00:11 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 11:02:17 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 125.9 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/YAPSA_1.18.0.tar.gz && rm -rf YAPSA.buildbin-libdir && mkdir YAPSA.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=YAPSA.buildbin-libdir YAPSA_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL YAPSA_1.18.0.zip && rm YAPSA_1.18.0.tar.gz YAPSA_1.18.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 1281k 100 1281k 0 0 1982k 0 --:--:-- --:--:-- --:--:-- 1986k install for i386 * installing *source* package 'YAPSA' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'YAPSA' finding HTML links ... done GenomeOfNl_raw html LCD html LCD_SMC html LCD_complex_cutoff html MutCat_indel_df html SMC html SMC_perPID html YAPSA html add_annotation html add_as_fist_to_list html aggregate_exposures_by_category html annotate_intermut_dist_PID html annotate_intermut_dist_cohort html annotation_exposures_barplot html annotation_exposures_list_barplot html annotation_heatmap_exposures html attribute_nucleotide_exchanges html attribute_sequence_contex_indel html attribution_of_indels html build_gene_list_for_pathway html classify_indels html compare_SMCs html compare_exposures html compare_expousre_sets html compare_sets html compare_to_catalogues html complex_heatmap_exposures html computeLogLik html compute_comparison_stat_df html confIntExp html confidence_indel_calulation html confidence_indel_only_calulation html correct_rounded html cosineDist html cosineMatchDist html create_indel_mut_cat_from_df html create_indel_mutation_catalogue_from_df html create_mutation_catalogue_from_VR html create_mutation_catalogue_from_df html finding level-2 HTML links ... done cut_breaks_as_intervals html cutoffs html cutoffs_pcawg html deriveSigInd_df html disambiguateVector html enrichSigs html exampleINDEL_YAPSA html exampleYAPSA html exchange_colour_vector html exome_mutCatRaw_df html exposures_barplot html extract_names_from_gene_list html find_affected_PIDs html getSequenceContext html get_extreme_PIDs html hclust_exposures html logLikelihood html lymphomaNature2013_mutCat_df html makeVRangesFromDataFrame html make_catalogue_strata_df html make_comparison_matrix html make_strata_df html make_subgroups_df html melt_exposures html merge_exposures html normalizeMotifs_otherRownames html normalize_df_per_dim html plotExchangeSpectra html plotExchangeSpectra_indel html plotExposuresConfidence html plotExposuresConfidence_indel html plot_SMC html plot_exposures html plot_strata html read_entry html relateSigs html repeat_df html round_precision html run_SMC html run_annotate_vcf_pl html run_comparison_catalogues html run_comparison_general html run_kmer_frequency_correction html run_kmer_frequency_normalization html run_plot_strata_general html shapiro_if_possible html sigs html sigs_pcawg html split_exposures_by_subgroups html stat_plot_subgroups html stat_test_SMC html stat_test_subgroups html stderrmean html sum_over_list_of_df html targetCapture_cor_factors html temp_trellis_rainfall_plot html testSigs html test_exposureAffected html test_gene_list_in_exposures html transform_rownames_R_to_MATLAB html translate_to_hg19 html trellis_rainfall_plot html trellis_rainfall_plot_old html variateExp html variateExpSingle html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'YAPSA' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'YAPSA' as YAPSA_1.18.0.zip * DONE (YAPSA) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'YAPSA' successfully unpacked and MD5 sums checked