Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:05:56 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the Xeva package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Xeva.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 2029/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Xeva 1.8.0 (landing page) Benjamin Haibe-Kains
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | ERROR | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: Xeva |
Version: 1.8.0 |
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:Xeva.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings Xeva_1.8.0.tar.gz |
StartedAt: 2021-10-14 12:03:20 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 12:06:23 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 183.7 seconds |
RetCode: 0 |
Status: OK |
CheckDir: Xeva.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:Xeva.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings Xeva_1.8.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.13-bioc/meat/Xeva.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘Xeva/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘Xeva’ version ‘1.8.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘Xeva’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... NOTE Note: found 31 marked UTF-8 strings * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.13-bioc/meat/Xeva.Rcheck/00check.log’ for details.
Xeva.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL Xeva ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’ * installing *source* package ‘Xeva’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Xeva)
Xeva.Rcheck/Xeva-Ex.timings
name | user | system | elapsed | |
ABC | 0.004 | 0.000 | 0.004 | |
AUC | 0.015 | 0.002 | 0.017 | |
TGI | 0.001 | 0.000 | 0.001 | |
addExperimentalDesign | 0.074 | 0.015 | 0.090 | |
angle | 0.007 | 0.000 | 0.007 | |
batchInfo | 0.080 | 0.012 | 0.092 | |
createXevaSet | 0.078 | 0.016 | 0.096 | |
dosePlot | 0.226 | 0.004 | 0.231 | |
downloadXevaSet | 0.029 | 0.000 | 0.685 | |
drugInform | 0.087 | 0.000 | 0.087 | |
drugSensitivitySig | 0.283 | 0.000 | 0.282 | |
getExperiment | 0.135 | 0.007 | 0.143 | |
getMolecularProfiles | 0.082 | 0.004 | 0.085 | |
lmm | 0.070 | 0.000 | 0.069 | |
mRECIST | 0.002 | 0.000 | 0.002 | |
modelInfo | 0.109 | 0.000 | 0.109 | |
plotPDX | 0.862 | 0.064 | 0.926 | |
plotmRECIST | 2.209 | 0.668 | 2.876 | |
response | 0.112 | 0.004 | 0.116 | |
selectModelIds | 0.125 | 0.004 | 0.128 | |
sensitivity | 0.082 | 0.004 | 0.085 | |
setResponse | 1.609 | 0.024 | 1.634 | |
slope | 0.008 | 0.000 | 0.009 | |
subsetXeva | 0.146 | 0.008 | 0.153 | |
summarizeMolecularProfiles | 0.115 | 0.000 | 0.115 | |
summarizeResponse | 0.153 | 0.000 | 0.153 | |
waterfall | 0.547 | 0.004 | 0.551 | |