Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:58 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the XINA package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/XINA.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 2030/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
XINA 1.10.0 (landing page) Lang Ho Lee
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: XINA |
Version: 1.10.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:XINA.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings XINA_1.10.0.tar.gz |
StartedAt: 2021-10-15 01:16:46 -0400 (Fri, 15 Oct 2021) |
EndedAt: 2021-10-15 01:19:58 -0400 (Fri, 15 Oct 2021) |
EllapsedTime: 191.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: XINA.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:XINA.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings XINA_1.10.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.13-bioc/meat/XINA.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘XINA/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘XINA’ version ‘1.10.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .git_fetch_output.txt .git_merge_output.txt These were most likely included in error. See section ‘Package structure’ in the ‘Writing R Extensions’ manual. * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘XINA’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed xina_clustering 41.805 0.332 42.201 plot_condition_compositions 21.225 0.108 21.388 plot_clusters 12.787 0.048 12.848 mutate_colors 12.195 0.046 12.251 get_condition_biased_comigrations 6.611 0.029 6.646 xina_plot_all 6.096 0.148 6.258 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.13-bioc/meat/XINA.Rcheck/00check.log’ for details.
XINA.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL XINA ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’ * installing *source* package ‘XINA’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (XINA)
XINA.Rcheck/XINA-Ex.timings
name | user | system | elapsed | |
alluvial_enriched | 4.126 | 0.134 | 4.266 | |
draw_alluvial_plot | 0.069 | 0.008 | 0.076 | |
get_comigrations_by_name | 0.047 | 0.003 | 0.050 | |
get_condition_biased_comigrations | 6.611 | 0.029 | 6.646 | |
get_unknown_ppi_nodes | 0.089 | 0.007 | 0.096 | |
load_previous_results | 1.719 | 0.023 | 1.742 | |
make_random_xina_data | 0.283 | 0.025 | 0.308 | |
mutate_colors | 12.195 | 0.046 | 12.251 | |
plot_clusters | 12.787 | 0.048 | 12.848 | |
plot_clusters_all | 4.291 | 0.034 | 4.331 | |
plot_condition_compositions | 21.225 | 0.108 | 21.388 | |
plot_enrichment_results | 0.000 | 0.000 | 0.001 | |
xina_analysis | 0.000 | 0.001 | 0.000 | |
xina_clustering | 41.805 | 0.332 | 42.201 | |
xina_enrichment | 0.000 | 0.001 | 0.000 | |
xina_plot_all | 6.096 | 0.148 | 6.258 | |
xina_plot_bycluster | 0.246 | 0.007 | 0.254 | |
xina_plot_single | 0.186 | 0.007 | 0.194 | |