Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:05:56 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the XCIR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/XCIR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 2026/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
XCIR 1.6.0 (landing page) Renan Sauteraud
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: XCIR |
Version: 1.6.0 |
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:XCIR.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings XCIR_1.6.0.tar.gz |
StartedAt: 2021-10-14 12:02:57 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 12:07:53 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 295.9 seconds |
RetCode: 0 |
Status: OK |
CheckDir: XCIR.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:XCIR.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings XCIR_1.6.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.13-bioc/meat/XCIR.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘XCIR/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘XCIR’ version ‘1.6.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘XCIR’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed betaBinomXI 6.548 0.328 6.807 sample_clean 6.335 0.388 6.649 plotQC 5.595 0.236 5.765 getXCIstate 5.510 0.269 5.710 annotateX 3.392 0.355 6.212 addAnno 3.274 0.264 7.323 mart_genes 2.528 0.117 24.074 getGenicDP 2.455 0.116 5.124 readVCF4 2.368 0.181 5.138 readRNASNPs 2.388 0.143 5.242 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
XCIR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL XCIR ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’ * installing *source* package ‘XCIR’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (XCIR)
XCIR.Rcheck/XCIR-Ex.timings
name | user | system | elapsed | |
BetaConversion | 0.001 | 0.000 | 0.001 | |
addAnno | 3.274 | 0.264 | 7.323 | |
annotateX | 3.392 | 0.355 | 6.212 | |
betaBinomXI | 6.548 | 0.328 | 6.807 | |
consensusXCI | 0.056 | 0.004 | 0.047 | |
getGenicDP | 2.455 | 0.116 | 5.124 | |
getXCIstate | 5.510 | 0.269 | 5.710 | |
mart_genes | 2.528 | 0.117 | 24.074 | |
plotQC | 5.595 | 0.236 | 5.765 | |
readRNASNPs | 2.388 | 0.143 | 5.242 | |
readVCF4 | 2.368 | 0.181 | 5.138 | |
readXCI | 0.001 | 0.000 | 0.002 | |
sample_clean | 6.335 | 0.388 | 6.649 | |