Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:26 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the VanillaICE package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/VanillaICE.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1992/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
VanillaICE 1.54.0 (landing page) Robert Scharpf
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | WARNINGS | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |||||||||
Package: VanillaICE |
Version: 1.54.0 |
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/VanillaICE_1.54.0.tar.gz && rm -rf VanillaICE.buildbin-libdir && mkdir VanillaICE.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=VanillaICE.buildbin-libdir VanillaICE_1.54.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL VanillaICE_1.54.0.zip && rm VanillaICE_1.54.0.tar.gz VanillaICE_1.54.0.zip |
StartedAt: 2021-10-14 10:41:09 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 10:42:35 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 86.1 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/VanillaICE_1.54.0.tar.gz && rm -rf VanillaICE.buildbin-libdir && mkdir VanillaICE.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=VanillaICE.buildbin-libdir VanillaICE_1.54.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL VanillaICE_1.54.0.zip && rm VanillaICE_1.54.0.tar.gz VanillaICE_1.54.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 1100k 100 1100k 0 0 2326k 0 --:--:-- --:--:-- --:--:-- 2330k install for i386 * installing *source* package 'VanillaICE' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"c:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c rinit.c -o rinit.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"c:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c viterbi.c -o viterbi.o C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o VanillaICE.dll tmp.def rinit.o viterbi.o -lm -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/VanillaICE.buildbin-libdir/00LOCK-VanillaICE/00new/VanillaICE/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading No methods found in package 'oligoClasses' for request: 'mean' when loading 'crlmm' Creating a new generic function for 'distance' in package 'VanillaICE' ** help *** installing help indices converting help for package 'VanillaICE' finding HTML links ... done ArrayViews-class html CopyNumScanParams html finding level-2 HTML links ... done EmissionParam-methods html FilterParam-class html HMM html HMMList-class html HMMList html HmmGRanges-methods html HmmParam html HmmTrellisParam html IO html IdiogramParam-class html IdiogramParams-class html LogLik-class html LogLik html LowLevelSummaries html NA_filter html SnpArrayExperiment-class html SnpExperiment html SnpGRanges html TransitionParam html VanillaICE html Viterbi-methods html acf2 html baumWelchUpdate html calculateEmission html cnvFilter html doUpdate html dropDuplicatedMapLocs html dropSexChrom html emission html emissionParam html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/VanillaICE.buildbin-libdir/00LOCK-VanillaICE/00new/VanillaICE/help/emissionParam.html filters html getExampleSnpExperiment html getHmmParams html hmm2 html hmmResults html isHeterozygous html matrixOrNULL-class html numberFeatures html parseSourceFile html parsedPath html plotting html probability html rescale html robust-statistics html segs html snpArrayAssays html snp_exp html sourcePaths html start-oligoSnpSet-method html state-methods html sweepMode html threshold html updateHmmParams html viewports html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location No methods found in package 'oligoClasses' for request: 'mean' when loading 'crlmm' ** testing if installed package can be loaded from final location No methods found in package 'oligoClasses' for request: 'mean' when loading 'crlmm' ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'VanillaICE' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c rinit.c -o rinit.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c viterbi.c -o viterbi.o C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o VanillaICE.dll tmp.def rinit.o viterbi.o -lm -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/VanillaICE.buildbin-libdir/VanillaICE/libs/x64 ** testing if installed package can be loaded No methods found in package 'oligoClasses' for request: 'mean' when loading 'crlmm' * MD5 sums packaged installation of 'VanillaICE' as VanillaICE_1.54.0.zip * DONE (VanillaICE) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'VanillaICE' successfully unpacked and MD5 sums checked