Back to Multiple platform build/check report for BioC 3.13
ABCDEFGHIJKLMNOPQRST[U]VWXYZ

This page was generated on 2021-10-15 15:06:26 -0400 (Fri, 15 Oct 2021).

CHECK results for Ularcirc on tokay2

To the developers/maintainers of the Ularcirc package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Ularcirc.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1983/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Ularcirc 1.10.0  (landing page)
David Humphreys
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/Ularcirc
git_branch: RELEASE_3_13
git_last_commit: 5661ddd
git_last_commit_date: 2021-05-19 12:36:10 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: Ularcirc
Version: 1.10.0
Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:Ularcirc.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings Ularcirc_1.10.0.tar.gz
StartedAt: 2021-10-15 07:05:05 -0400 (Fri, 15 Oct 2021)
EndedAt: 2021-10-15 07:07:21 -0400 (Fri, 15 Oct 2021)
EllapsedTime: 136.2 seconds
RetCode: 0
Status:   OK  
CheckDir: Ularcirc.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:Ularcirc.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings Ularcirc_1.10.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/Ularcirc.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Ularcirc/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'Ularcirc' version '1.10.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'Ularcirc' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from:
  'DT' 'GenomeInfoDb' 'GenomeInfoDbData' 'Organism.dplyr' 'Sushi'
  'ggplot2' 'ggrepel' 'gsubfn' 'mirbase.db' 'moments' 'shinyFiles'
  'shinydashboard' 'shinyjs' 'yaml'
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                          user system elapsed
Compatible_Annotation_DBs 7.06      1    8.06
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                          user system elapsed
Compatible_Annotation_DBs 6.95   0.36    7.32
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'C:/Users/biocbuild/bbs-3.13-bioc/meat/Ularcirc.Rcheck/00check.log'
for details.



Installation output

Ularcirc.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/Ularcirc_1.10.0.tar.gz && rm -rf Ularcirc.buildbin-libdir && mkdir Ularcirc.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Ularcirc.buildbin-libdir Ularcirc_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL Ularcirc_1.10.0.zip && rm Ularcirc_1.10.0.tar.gz Ularcirc_1.10.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 68 4764k   68 3245k    0     0  3459k      0  0:00:01 --:--:--  0:00:01 3460k
100 4764k  100 4764k    0     0  3789k      0  0:00:01  0:00:01 --:--:-- 3793k

install for i386

* installing *source* package 'Ularcirc' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'Ularcirc'
    finding HTML links ... done
    Compatible_Annotation_DBs               html  
    Ularcirc                                html  
    bsj_fastq_generate                      html  
    bsj_to_circRNA_sequence                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'Ularcirc' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Ularcirc' as Ularcirc_1.10.0.zip
* DONE (Ularcirc)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'Ularcirc' successfully unpacked and MD5 sums checked

Tests output


Example timings

Ularcirc.Rcheck/examples_i386/Ularcirc-Ex.timings

nameusersystemelapsed
Compatible_Annotation_DBs7.061.008.06
Ularcirc000
bsj_fastq_generate0.050.000.32
bsj_to_circRNA_sequence1.970.112.08

Ularcirc.Rcheck/examples_x64/Ularcirc-Ex.timings

nameusersystemelapsed
Compatible_Annotation_DBs6.950.367.32
Ularcirc000
bsj_fastq_generate0.040.000.05
bsj_to_circRNA_sequence2.210.122.33