Vincent Carey
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/TFutils |
| git_branch: RELEASE_3_13 |
| git_last_commit: df013ae |
| git_last_commit_date: 2021-08-03 17:29:35 -0400 (Tue, 03 Aug 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:25 -0400 (Fri, 15 Oct 2021).
|
To the developers/maintainers of the TFutils package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/TFutils.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1911/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| TFutils 1.12.2 (landing page) Vincent Carey
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | ERROR | skipped | skipped | |||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: TFutils |
| Version: 1.12.2 |
| Command: chmod a+r TFutils -R && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data TFutils |
| StartedAt: 2021-10-14 18:46:31 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 18:47:39 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 67.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r TFutils -R && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data TFutils ### ############################################################################## ############################################################################## * checking for file 'TFutils/DESCRIPTION' ... OK * preparing 'TFutils': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'TFutils.Rmd' using rmarkdown [E::hts_open_format] Failed to open file http://s3.amazonaws.com/biocfound-tfbs/M0635_1.02sort.bed.gz Quitting from lines 282-287 (TFutils.Rmd) Error: processing vignette 'TFutils.Rmd' failed with diagnostics: BiocParallel errors element index: 1, 2, 3, 4, 5, 6, ... first error: scanTabix: failed to open file: http://s3.amazonaws.com/biocfound-tfbs/M0635_1.02sort.bed.gz path: http://s3.amazonaws.com/biocfound-tfbs/M0635_1.02sort.bed.gz index: http://s3.amazonaws.com/biocfound-tfbs/M0635_1.02sort.bed.gz.tbi --- failed re-building 'TFutils.Rmd' --- re-building 'fimo16.Rmd' using rmarkdown [E::hts_open_format] Failed to open file http://s3.amazonaws.com/biocfound-tfbs/M3675_1.02sort.bed.gz Quitting from lines 39-45 (fimo16.Rmd) Error: processing vignette 'fimo16.Rmd' failed with diagnostics: BiocParallel errors element index: 1 first error: scanTabix: failed to open file: http://s3.amazonaws.com/biocfound-tfbs/M3675_1.02sort.bed.gz path: http://s3.amazonaws.com/biocfound-tfbs/M3675_1.02sort.bed.gz index: http://s3.amazonaws.com/biocfound-tfbs/M3675_1.02sort.bed.gz.tbi --- failed re-building 'fimo16.Rmd' SUMMARY: processing the following files failed: 'TFutils.Rmd' 'fimo16.Rmd' Error: Vignette re-building failed. Execution halted