Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:25 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the TCGAbiolinks package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/TCGAbiolinks.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1899/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
TCGAbiolinks 2.20.1 (landing page) Tiago Chedraoui Silva
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | WARNINGS | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |||||||||
Package: TCGAbiolinks |
Version: 2.20.1 |
Command: chmod a+r TCGAbiolinks -R && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data TCGAbiolinks |
StartedAt: 2021-10-14 18:44:51 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 18:54:45 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 594.1 seconds |
RetCode: 0 |
Status: OK |
PackageFile: TCGAbiolinks_2.20.1.tar.gz |
PackageFileSize: 56.79 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r TCGAbiolinks -R && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data TCGAbiolinks ### ############################################################################## ############################################################################## * checking for file 'TCGAbiolinks/DESCRIPTION' ... OK * preparing 'TCGAbiolinks': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... OK * checking for LF line-endings in source and make files and shell scripts * checking for empty or unneeded directories * building 'TCGAbiolinks_2.20.1.tar.gz' Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, : storing paths of more than 100 bytes is not portable: 'TCGAbiolinks/vignettes/GDCdata/TCGA-ACC/harmonized/Clinical/Clinical_Supplement/4612e74a-f374-459a-a14f-8cecdb1c14f8/' Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, : storing paths of more than 100 bytes is not portable: 'TCGAbiolinks/vignettes/GDCdata/TCGA-ACC/harmonized/Clinical/Clinical_Supplement/4612e74a-f374-459a-a14f-8cecdb1c14f8/nationwidechildrens.org_clinical_radiation_acc.txt' Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, : storing paths of more than 100 bytes is not portable: 'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Biospecimen/Biospecimen_Supplement/22656b71-476a-4b5f-9f3b-82afb29a34bc/' Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, : storing paths of more than 100 bytes is not portable: 'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Biospecimen/Biospecimen_Supplement/22656b71-476a-4b5f-9f3b-82afb29a34bc/nationwidechildrens.org_biospecimen_portion_brca.txt' Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, : storing paths of more than 100 bytes is not portable: 'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Biospecimen/Biospecimen_Supplement/41fd4c6c-2932-4c6b-914f-7abaea9dc8a0/' Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, : storing paths of more than 100 bytes is not portable: 'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Biospecimen/Biospecimen_Supplement/41fd4c6c-2932-4c6b-914f-7abaea9dc8a0/nationwidechildrens.org_ssf_tumor_samples_brca.txt' Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, : storing paths of more than 100 bytes is not portable: 'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Biospecimen/Biospecimen_Supplement/43569ab9-5a32-45ef-a07e-e93f45416a16/' Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, : storing paths of more than 100 bytes is not portable: 'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Biospecimen/Biospecimen_Supplement/43569ab9-5a32-45ef-a07e-e93f45416a16/nationwidechildrens.org_biospecimen_shipment_portion_brca.txt' Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, : storing paths of more than 100 bytes is not portable: 'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Biospecimen/Biospecimen_Supplement/5907be67-69f6-4339-8264-952a2462bea5/' Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, : storing paths of more than 100 bytes is not portable: 'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Biospecimen/Biospecimen_Supplement/5907be67-69f6-4339-8264-952a2462bea5/nationwidechildrens.org_ssf_normal_controls_brca.txt' Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, : storing paths of more than 100 bytes is not portable: 'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Biospecimen/Biospecimen_Supplement/950ee56c-df20-4b39-867e-c73f17d0f4f6/' Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, : storing paths of more than 100 bytes is not portable: 'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Biospecimen/Biospecimen_Supplement/950ee56c-df20-4b39-867e-c73f17d0f4f6/nationwidechildrens.org_biospecimen_aliquot_brca.txt' Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, : storing paths of more than 100 bytes is not portable: 'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Biospecimen/Biospecimen_Supplement/a24d7574-e419-47ce-9293-b9b29f854a10/' Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, : storing paths of more than 100 bytes is not portable: 'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Biospecimen/Biospecimen_Supplement/a24d7574-e419-47ce-9293-b9b29f854a10/nationwidechildrens.org_biospecimen_protocol_brca.txt' Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, : storing paths of more than 100 bytes is not portable: 'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Biospecimen/Biospecimen_Supplement/c10090b8-fa42-4e32-86a0-9dedceb5b605/' Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, : storing paths of more than 100 bytes is not portable: 'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Biospecimen/Biospecimen_Supplement/c10090b8-fa42-4e32-86a0-9dedceb5b605/nationwidechildrens.org_biospecimen_slide_brca.txt' Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, : storing paths of more than 100 bytes is not portable: 'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Biospecimen/Biospecimen_Supplement/c5039e7e-14d8-4e59-ba20-0d3fa38b86df/' Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, : storing paths of more than 100 bytes is not portable: 'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Biospecimen/Biospecimen_Supplement/c5039e7e-14d8-4e59-ba20-0d3fa38b86df/nationwidechildrens.org_biospecimen_sample_brca.txt' Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, : storing paths of more than 100 bytes is not portable: 'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Biospecimen/Biospecimen_Supplement/d0c967b5-78ee-4bc4-9493-3cbe44af1bf5/' Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, : storing paths of more than 100 bytes is not portable: 'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Biospecimen/Biospecimen_Supplement/d0c967b5-78ee-4bc4-9493-3cbe44af1bf5/nationwidechildrens.org_biospecimen_analyte_brca.txt' Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, : storing paths of more than 100 bytes is not portable: 'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Biospecimen/Biospecimen_Supplement/edbb5de2-d0b5-4a07-a0e1-19e952a5117d/' Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, : storing paths of more than 100 bytes is not portable: 'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Biospecimen/Biospecimen_Supplement/edbb5de2-d0b5-4a07-a0e1-19e952a5117d/nationwidechildrens.org_biospecimen_diagnostic_slides_brca.txt' Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, : storing paths of more than 100 bytes is not portable: 'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Clinical/Clinical_Supplement/0a40467f-9495-4c5b-b56e-3347a3ee0572/' Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, : storing paths of more than 100 bytes is not portable: 'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Clinical/Clinical_Supplement/0a40467f-9495-4c5b-b56e-3347a3ee0572/nationwidechildrens.org_clinical_radiation_brca.txt' Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, : storing paths of more than 100 bytes is not portable: 'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Clinical/Clinical_Supplement/1e6b79ff-9787-4cbe-b19d-ebabb6b43589/' Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, : storing paths of more than 100 bytes is not portable: 'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Clinical/Clinical_Supplement/1e6b79ff-9787-4cbe-b19d-ebabb6b43589/nationwidechildrens.org_clinical_drug_brca.txt' Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, : storing paths of more than 100 bytes is not portable: 'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Clinical/Clinical_Supplement/22f38342-3f1a-47e5-9025-c19719fa21d0/' Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, : storing paths of more than 100 bytes is not portable: 'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Clinical/Clinical_Supplement/22f38342-3f1a-47e5-9025-c19719fa21d0/nationwidechildrens.org_clinical_follow_up_v1.5_brca.txt' Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, : storing paths of more than 100 bytes is not portable: 'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Clinical/Clinical_Supplement/403b5cef-8173-47c7-b56a-cc94dcfbb2e3/' Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, : storing paths of more than 100 bytes is not portable: 'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Clinical/Clinical_Supplement/403b5cef-8173-47c7-b56a-cc94dcfbb2e3/nationwidechildrens.org_clinical_follow_up_v2.1_brca.txt' Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, : storing paths of more than 100 bytes is not portable: 'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Clinical/Clinical_Supplement/62d4515f-a30b-4b1a-b2dd-c8bf9476e803/' Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, : storing paths of more than 100 bytes is not portable: 'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Clinical/Clinical_Supplement/62d4515f-a30b-4b1a-b2dd-c8bf9476e803/nationwidechildrens.org_clinical_follow_up_v4.0_brca.txt' Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, : storing paths of more than 100 bytes is not portable: 'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Clinical/Clinical_Supplement/8162d394-8b64-4da2-9f5b-d164c54b9608/' Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, : storing paths of more than 100 bytes is not portable: 'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Clinical/Clinical_Supplement/8162d394-8b64-4da2-9f5b-d164c54b9608/nationwidechildrens.org_clinical_patient_brca.txt' Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, : storing paths of more than 100 bytes is not portable: 'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Clinical/Clinical_Supplement/a88c168e-4bba-4bd2-9c0c-77934444cc1c/' Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, : storing paths of more than 100 bytes is not portable: 'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Clinical/Clinical_Supplement/a88c168e-4bba-4bd2-9c0c-77934444cc1c/nationwidechildrens.org_clinical_nte_brca.txt' Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, : storing paths of more than 100 bytes is not portable: 'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Clinical/Clinical_Supplement/a9baecf0-5549-4396-8805-a6d1681d11cd/' Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, : storing paths of more than 100 bytes is not portable: 'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Clinical/Clinical_Supplement/a9baecf0-5549-4396-8805-a6d1681d11cd/nationwidechildrens.org_clinical_follow_up_v4.0_nte_brca.txt' Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, : storing paths of more than 100 bytes is not portable: 'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Clinical/Clinical_Supplement/f434b393-9e32-4ca2-aa1a-3b0de36b5ffe/' Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, : storing paths of more than 100 bytes is not portable: 'TCGAbiolinks/vignettes/GDCdata/TCGA-BRCA/harmonized/Clinical/Clinical_Supplement/f434b393-9e32-4ca2-aa1a-3b0de36b5ffe/nationwidechildrens.org_clinical_omf_v4.0_brca.txt'