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### Running command:
###
###   C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:SPLINTER.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings SPLINTER_1.18.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/SPLINTER.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'SPLINTER/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'SPLINTER' version '1.18.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SPLINTER' can be installed ... WARNING
Found the following significant warnings:
  Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'SPLINTER'
See 'C:/Users/biocbuild/bbs-3.13-bioc/meat/SPLINTER.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
             user system elapsed
getPCRsizes 17.31   0.17   18.77
eventPlot   12.59   0.94   13.69
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
             user system elapsed
getPCRsizes 18.62   0.15   18.78
eventPlot   11.05   0.08   11.12
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING
See
  'C:/Users/biocbuild/bbs-3.13-bioc/meat/SPLINTER.Rcheck/00check.log'
for details.

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/SPLINTER_1.18.0.tar.gz && rm -rf SPLINTER.buildbin-libdir && mkdir SPLINTER.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SPLINTER.buildbin-libdir SPLINTER_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL SPLINTER_1.18.0.zip && rm SPLINTER_1.18.0.tar.gz SPLINTER_1.18.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  805k  100  805k    0     0  2031k      0 --:--:-- --:--:-- --:--:-- 2039k

install for i386

* installing *source* package 'SPLINTER' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis'
Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'SPLINTER'
** help
*** installing help indices
  converting help for package 'SPLINTER'
    finding HTML links ... done
    acceptor.m                              html  
    addEnsemblAnnotation                    html  
    annotateEvents                          html  
    callPrimer3                             html  
    checkPrimer                             html  
    compatible_cds                          html  
    compatible_tx                           html  
    donor.m                                 html  
    eventOutcomeCompare                     html  
    eventOutcomeTranslate                   html  
    eventPlot                               html  
    extendROI                               html  
    extractSpliceEvents                     html  
    extractSpliceSites                      html  
    findCompatibleEvents                    html  
    findCompatibleExon                      html  
    findExactOverlaps                       html  
    findTX                                  html  
    findTermination                         html  
    getPCRsizes                             html  
    getRegionDNA                            html  
    insertRegion                            html  
    makeROI                                 html  
    makeUniqueIDs                           html  
    matchExons                              html  
    metaremove                              html  
    pcr_result1                             html  
    plot_seqlogo                            html  
    primers                                 html  
    psiPlot                                 html  
    region_minus_exon                       html  
    removeRegion                            html  
    remvalue                                html  
    roi                                     html  
    shapiroAcceptor                         html  
    shapiroDensity                          html  
    shapiroDonor                            html  
    splice_data                             html  
    splice_fasta                            html  
    splitPCRhit                             html  
    thecds                                  html  
    theexons                                html  
    valid_cds                               html  
    valid_tx                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis'
Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'SPLINTER'
** testing if installed package can be loaded from final location
Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis'
Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'SPLINTER'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'SPLINTER' ...
** testing if installed package can be loaded
Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis'
Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'SPLINTER'
* MD5 sums
packaged installation of 'SPLINTER' as SPLINTER_1.18.0.zip
* DONE (SPLINTER)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'SPLINTER' successfully unpacked and MD5 sums checked