Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:05:53 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the SIMAT package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SIMAT.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1767/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
SIMAT 1.24.0 (landing page) M. R. Nezami Ranjbar
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: SIMAT |
Version: 1.24.0 |
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:SIMAT.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings SIMAT_1.24.0.tar.gz |
StartedAt: 2021-10-14 11:38:22 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 11:39:20 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 58.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: SIMAT.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:SIMAT.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings SIMAT_1.24.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.13-bioc/meat/SIMAT.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘SIMAT/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘SIMAT’ version ‘1.24.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘SIMAT’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘runTests.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
SIMAT.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL SIMAT ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’ * installing *source* package ‘SIMAT’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SIMAT)
SIMAT.Rcheck/tests/runTests.Rout
R version 4.1.1 (2021-08-10) -- "Kick Things" Copyright (C) 2021 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > ## function for RUnit tests > > BiocGenerics:::testPackage("SIMAT") RUNIT TEST PROTOCOL -- Thu Oct 14 11:39:17 2021 *********************************************** Number of test functions: 16 Number of errors: 0 Number of failures: 0 1 Test Suite : SIMAT RUnit Tests - 16 test functions, 0 errors, 0 failures Number of test functions: 16 Number of errors: 0 Number of failures: 0 > > proc.time() user system elapsed 1.899 0.142 2.030
SIMAT.Rcheck/SIMAT-Ex.timings
name | user | system | elapsed | |
Library | 0.006 | 0.000 | 0.006 | |
RItable | 0.000 | 0.001 | 0.001 | |
Run | 0.066 | 0.008 | 0.074 | |
Targets | 0.000 | 0.004 | 0.004 | |
getEIC | 0.153 | 0.097 | 0.250 | |
getPeak | 0.420 | 0.056 | 0.475 | |
getPeakScore | 0.256 | 0.012 | 0.267 | |
getRI | 0.000 | 0.002 | 0.001 | |
getRIStandard | 0.003 | 0.001 | 0.004 | |
getScore | 0 | 0 | 0 | |
getTarget | 1.790 | 0.036 | 1.826 | |
getTargetTable | 0.002 | 0.000 | 0.002 | |
optFrag | 1.763 | 0.004 | 1.767 | |
plotEIC | 0.792 | 0.004 | 0.796 | |
plotTIC | 0.219 | 0.000 | 0.219 | |
putTargetTable | 0.002 | 0.000 | 0.002 | |
readCDF | 1.415 | 0.000 | 1.426 | |
readMSL | 0.006 | 0.004 | 0.011 | |
target.table | 0.000 | 0.001 | 0.001 | |
writeMSL | 0.000 | 0.002 | 0.002 | |
writeResult | 0.271 | 0.004 | 0.275 | |