Jakob Wirbel
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/SIAMCAT |
| git_branch: RELEASE_3_13 |
| git_last_commit: fb65d54 |
| git_last_commit_date: 2021-05-19 12:35:49 -0400 (Wed, 19 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:22 -0400 (Fri, 15 Oct 2021).
|
To the developers/maintainers of the SIAMCAT package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SIAMCAT.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1754/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SIAMCAT 1.12.0 (landing page) Jakob Wirbel
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: SIAMCAT |
| Version: 1.12.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/SIAMCAT_1.12.0.tar.gz && rm -rf SIAMCAT.buildbin-libdir && mkdir SIAMCAT.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SIAMCAT.buildbin-libdir SIAMCAT_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL SIAMCAT_1.12.0.zip && rm SIAMCAT_1.12.0.tar.gz SIAMCAT_1.12.0.zip |
| StartedAt: 2021-10-14 08:28:34 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 08:30:32 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 117.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/SIAMCAT_1.12.0.tar.gz && rm -rf SIAMCAT.buildbin-libdir && mkdir SIAMCAT.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SIAMCAT.buildbin-libdir SIAMCAT_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL SIAMCAT_1.12.0.zip && rm SIAMCAT_1.12.0.tar.gz SIAMCAT_1.12.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
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0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
2 11.8M 2 247k 0 0 759k 0 0:00:15 --:--:-- 0:00:15 759k
14 11.8M 14 1794k 0 0 1350k 0 0:00:08 0:00:01 0:00:07 1350k
35 11.8M 35 4341k 0 0 1866k 0 0:00:06 0:00:02 0:00:04 1866k
61 11.8M 61 7459k 0 0 2239k 0 0:00:05 0:00:03 0:00:02 2239k
95 11.8M 95 11.2M 0 0 2629k 0 0:00:04 0:00:04 --:--:-- 2629k
95 11.8M 95 11.2M 0 0 2164k 0 0:00:05 0:00:05 --:--:-- 2255k
100 11.8M 100 11.8M 0 0 2190k 0 0:00:05 0:00:05 --:--:-- 2457k
install for i386
* installing *source* package 'SIAMCAT' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'SIAMCAT'
finding HTML links ... done
SIAMCAT-package html
accessSlot html
add.meta.pred html
assign-associations html
assign-data_split html
assign-eval_data html
assign-filt_feat html
assign-label html
assign-meta html
assign-model_list html
assign-norm_feat html
assign-orig_feat html
assign-physeq html
assign-pred_matrix html
assoc_param-methods html
associations-methods html
check.associations html
check.confounders html
create.data.split html
create.label html
data_split-methods html
eval_data-methods html
evaluate.predictions html
feat.crc.zeller html
feature_type-methods html
feature_weights-methods html
filt_feat-methods html
filt_params-methods html
filter.features html
filter.label html
get.component.classes html
get.filt_feat.matrix html
get.norm_feat.matrix html
get.orig_feat.matrix html
label-methods html
make.predictions html
meta-methods html
meta.crc.zeller html
model.evaluation.plot html
model.interpretation.plot html
model_list-methods html
model_type-methods html
models-methods html
norm_feat-methods html
norm_params-methods html
normalize.features html
orig_feat-methods html
parse.label.header html
physeq-methods html
pred_matrix-methods html
read.label html
read.lefse html
select.samples html
show-methods html
siamcat-class html
siamcat html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/SIAMCAT.buildbin-libdir/00LOCK-SIAMCAT/00new/SIAMCAT/help/siamcat.html
siamcat.to.lefse html
siamcat.to.maaslin html
siamcat_example html
summarize.features html
finding level-2 HTML links ... done
train.model html
validate.data html
weight_matrix-methods html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'SIAMCAT' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SIAMCAT' as SIAMCAT_1.12.0.zip
* DONE (SIAMCAT)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'SIAMCAT' successfully unpacked and MD5 sums checked