Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:05:50 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the RedeR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RedeR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1545/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
RedeR 1.40.5 (landing page) Mauro Castro
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: RedeR |
Version: 1.40.5 |
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:RedeR.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings RedeR_1.40.5.tar.gz |
StartedAt: 2021-10-14 11:16:29 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 11:17:05 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 35.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: RedeR.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:RedeR.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings RedeR_1.40.5.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.13-bioc/meat/RedeR.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘RedeR/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘RedeR’ version ‘1.40.5’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘RedeR’ can be installed ... OK * checking installed package size ... NOTE installed size is 7.9Mb sub-directories of 1Mb or more: data 3.3Mb java 4.1Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.13-bioc/meat/RedeR.Rcheck/00check.log’ for details.
RedeR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL RedeR ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’ * installing *source* package ‘RedeR’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RedeR)
RedeR.Rcheck/RedeR-Ex.timings
name | user | system | elapsed | |
RedPort-class | 0.004 | 0.000 | 0.003 | |
RedPort | 0.000 | 0.000 | 0.001 | |
RedeR.data | 0.390 | 0.016 | 0.406 | |
addEdgeBetweenContainers | 0.014 | 0.000 | 0.013 | |
addEdges | 0.009 | 0.000 | 0.009 | |
addGraph | 0.006 | 0.004 | 0.011 | |
addLegend | 0.009 | 0.000 | 0.008 | |
addNodes | 0.008 | 0.000 | 0.009 | |
addSeries | 0.016 | 0.000 | 0.016 | |
addSubgraph | 0.009 | 0.000 | 0.009 | |
addSubgraph.list | 0.009 | 0.000 | 0.008 | |
att | 0.027 | 0.008 | 0.035 | |
calld | 0.001 | 0.000 | 0.000 | |
cea | 0.022 | 0.000 | 0.022 | |
deSelectEdges | 0.009 | 0.000 | 0.010 | |
deSelectGraph | 0.005 | 0.004 | 0.009 | |
deSelectNodes | 0.008 | 0.000 | 0.008 | |
deleteEdges | 0.007 | 0.000 | 0.008 | |
deleteNodes | 0.008 | 0.000 | 0.007 | |
deleteSelectedEdges | 0.007 | 0.000 | 0.008 | |
deleteSelectedNodes | 0.052 | 0.000 | 0.052 | |
duplicateGraph | 0.008 | 0.000 | 0.007 | |
exitd | 0.001 | 0.000 | 0.001 | |
getContainerComponets | 0.008 | 0.000 | 0.008 | |
getEdgeIDs | 0.007 | 0.000 | 0.007 | |
getEdges | 0.005 | 0.003 | 0.008 | |
getGraph | 0.007 | 0.000 | 0.007 | |
getNodeIDs | 0.007 | 0.000 | 0.008 | |
getNodes | 0.008 | 0.000 | 0.007 | |
getSourceEdgeIDs | 0.008 | 0.000 | 0.008 | |
getTargetEdgeIDs | 0.007 | 0.000 | 0.008 | |
gtoy.rm | 0 | 0 | 0 | |
isDynamicsActive | 0.001 | 0.000 | 0.001 | |
mergeNodes | 0.005 | 0.004 | 0.008 | |
mergeOutEdges | 0.008 | 0.000 | 0.009 | |
nestNodes | 0.009 | 0.000 | 0.009 | |
nesthc | 1.137 | 0.044 | 1.182 | |
ping | 0.001 | 0.000 | 0.001 | |
relax | 0.011 | 0.000 | 0.012 | |
resetd | 0.000 | 0.000 | 0.001 | |
selectAllEdges | 0.009 | 0.003 | 0.011 | |
selectAllNodes | 0.003 | 0.008 | 0.011 | |
selectEdges | 0.011 | 0.000 | 0.011 | |
selectGraph | 0.010 | 0.000 | 0.011 | |
selectNodes | 0.012 | 0.000 | 0.012 | |
setArrowDirection | 0.009 | 0.004 | 0.012 | |
subg | 0.043 | 0.000 | 0.042 | |
updateContainerSize | 0.012 | 0.000 | 0.012 | |
updateGraph | 0.011 | 0.000 | 0.011 | |
version | 0.000 | 0.001 | 0.001 | |