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This page was generated on 2021-10-15 15:06:49 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the ReactomeContentService4R package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ReactomeContentService4R.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1532/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
ReactomeContentService4R 1.0.0 (landing page) Chi-Lam Poon
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: ReactomeContentService4R |
Version: 1.0.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:ReactomeContentService4R.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings ReactomeContentService4R_1.0.0.tar.gz |
StartedAt: 2021-10-14 22:57:38 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 22:58:21 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 42.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: ReactomeContentService4R.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:ReactomeContentService4R.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings ReactomeContentService4R_1.0.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.13-bioc/meat/ReactomeContentService4R.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘ReactomeContentService4R/DESCRIPTION’ ... OK * this is package ‘ReactomeContentService4R’ version ‘1.0.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘ReactomeContentService4R’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
ReactomeContentService4R.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL ReactomeContentService4R ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’ * installing *source* package ‘ReactomeContentService4R’ ... ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ReactomeContentService4R)
ReactomeContentService4R.Rcheck/ReactomeContentService4R-Ex.timings
name | user | system | elapsed | |
discover | 0.039 | 0.003 | 0.099 | |
exportEventFile | 0.008 | 0.001 | 0.063 | |
exportImage | 0.094 | 0.019 | 0.517 | |
getEntities | 0.069 | 0.020 | 0.412 | |
getEventsHierarchy | 0 | 0 | 0 | |
getOrthology | 0.033 | 0.002 | 0.159 | |
getParticipants | 0.059 | 0.012 | 0.309 | |
getPathways | 0.036 | 0.003 | 0.126 | |
getPerson | 0.027 | 0.001 | 0.622 | |
getSchemaClass | 0.116 | 0.015 | 2.477 | |
getSpecies | 0.011 | 0.003 | 0.059 | |
listSearchItems | 0.018 | 0.004 | 0.128 | |
mapId | 0.152 | 0.079 | 0.492 | |
query | 0.026 | 0.008 | 0.090 | |
searchQuery | 0.041 | 0.001 | 0.179 | |
spellCheck | 0.009 | 0.000 | 0.050 | |