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This page was generated on 2021-10-15 15:06:20 -0400 (Fri, 15 Oct 2021).

INSTALL results for RVS on tokay2

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raw results

Package 1658/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RVS 1.14.0  (landing page)
Thomas Sherman
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/RVS
git_branch: RELEASE_3_13
git_last_commit: 02ba79e
git_last_commit_date: 2021-05-19 12:29:20 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: RVS
Version: 1.14.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/RVS_1.14.0.tar.gz && rm -rf RVS.buildbin-libdir && mkdir RVS.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RVS.buildbin-libdir RVS_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL RVS_1.14.0.zip && rm RVS_1.14.0.tar.gz RVS_1.14.0.zip
StartedAt: 2021-10-14 07:56:55 -0400 (Thu, 14 Oct 2021)
EndedAt: 2021-10-14 07:57:44 -0400 (Thu, 14 Oct 2021)
EllapsedTime: 49.0 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/RVS_1.14.0.tar.gz && rm -rf RVS.buildbin-libdir && mkdir RVS.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RVS.buildbin-libdir RVS_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL RVS_1.14.0.zip && rm RVS_1.14.0.tar.gz RVS_1.14.0.zip
###
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##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 38  755k   38  291k    0     0   961k      0 --:--:-- --:--:-- --:--:--  961k
100  755k  100  755k    0     0  1440k      0 --:--:-- --:--:-- --:--:-- 1439k

install for i386

* installing *source* package 'RVS' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'RVS'
    finding HTML links ... done
    ComputeKinshipPropCoef-methods          html  
    GeneDrop                                html  
    RVS                                     html  
    RVgene                                  html  
    RVsharing-methods                       html  
    SnpMatrixToCount                        html  
    ancestorDistance                        html  
    areMating                               html  
    checkArgs                               html  
    computePFU                              html  
    computePhiVec                           html  
    convertMatrix                           html  
    createNetwork                           html  
    denomProb                               html  
    enrichmentPValue                        html  
    enrichmentPValue_R_Backend              html  
    ex.ped.mat                              html  
    exactSharingProb                        html  
    extract_carriers                        html  
    fam15157.vcf                            html  
    fam28003.vcf                            html  
    founderOccurence                        html  
    get.psubset                             html  
    inferNumAlleles                         html  
    inferTheta                              html  
    isDescendant                            html  
    marginalProb                            html  
    monteCarloSharingProb                   html  
    multipleFamilyPValue                    html  
    multipleFamilyPValue_R_Backend          html  
    multipleVariantPValue                   html  
    multipleVariantPValue_R_Backend         html  
    numerProb                               html  
    oldArgs                                 html  
    oneFounderSharingProb                   html  
    oneFounderSharingProbSplitting          html  
    ped2trio                                html  
    processPedigree-methods                 html  
    relatedFoundersCorrection               html  
    runMonteCarlo                           html  
    samplePedigrees                         html  
    simulatePedigree                        html  
    snpMat                                  html  
    twoFounderSharingProb                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'RVS' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RVS' as RVS_1.14.0.zip
* DONE (RVS)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'RVS' successfully unpacked and MD5 sums checked