Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:05:51 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the RUVcorr package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RUVcorr.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1655/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
RUVcorr 1.24.0 (landing page) Saskia Freytag
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | WARNINGS | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |||||||||
Package: RUVcorr |
Version: 1.24.0 |
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:RUVcorr.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings RUVcorr_1.24.0.tar.gz |
StartedAt: 2021-10-14 11:26:48 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 11:27:26 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 37.9 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: RUVcorr.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:RUVcorr.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings RUVcorr_1.24.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.13-bioc/meat/RUVcorr.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘RUVcorr/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘RUVcorr’ version ‘1.24.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘RUVcorr’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... WARNING Warning: S4 exports specified in 'NAMESPACE' but not defined in package ‘RUVcorr’ * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 WARNING See ‘/home/biocbuild/bbs-3.13-bioc/meat/RUVcorr.Rcheck/00check.log’ for details.
RUVcorr.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL RUVcorr ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’ * installing *source* package ‘RUVcorr’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RUVcorr)
RUVcorr.Rcheck/RUVcorr-Ex.timings
name | user | system | elapsed | |
ECDFPlot | 0.622 | 0.019 | 0.641 | |
PCAPlot | 1.463 | 0.016 | 1.479 | |
RLEPlot | 1.289 | 0.011 | 1.301 | |
RUVNaiveRidge | 0.391 | 0.011 | 0.404 | |
assessQuality | 0.072 | 0.000 | 0.072 | |
background | 0.053 | 0.007 | 0.061 | |
calculateThreshold | 1.117 | 0.009 | 1.125 | |
compareRanks | 0.630 | 0.011 | 0.641 | |
correlationPlot | 0.102 | 0.005 | 0.106 | |
eigenvaluePlot | 0.221 | 0.003 | 0.224 | |
empNegativeControls | 0.271 | 0.032 | 0.303 | |
findWeights | 0.294 | 0.051 | 0.346 | |
genePlot | 0.170 | 0.011 | 0.183 | |
histogramPlot | 0.264 | 0.004 | 0.267 | |
is.optimizeParameters | 0.001 | 0.001 | 0.000 | |
is.simulateGEdata | 0 | 0 | 0 | |
optimizeParameters | 1.205 | 0.022 | 1.229 | |
plot.optimizeParameters | 1.581 | 0.020 | 1.602 | |
plotDesign | 0.425 | 0.024 | 0.452 | |
plotThreshold | 1.228 | 0.008 | 1.237 | |
print.simulateGEdata | 0 | 0 | 0 | |
prioritise | 0.283 | 0.016 | 0.299 | |
simulateGEdata | 0.315 | 0.004 | 0.319 | |
wcor | 0.368 | 0.000 | 0.367 | |