Marcel Ramos
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/RTCGAToolbox |
| git_branch: RELEASE_3_13 |
| git_last_commit: adc18d9 |
| git_last_commit_date: 2021-06-14 16:46:27 -0400 (Mon, 14 Jun 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:20 -0400 (Fri, 15 Oct 2021).
|
To the developers/maintainers of the RTCGAToolbox package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RTCGAToolbox.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1644/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| RTCGAToolbox 2.22.1 (landing page) Marcel Ramos
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: RTCGAToolbox |
| Version: 2.22.1 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/RTCGAToolbox_2.22.1.tar.gz && rm -rf RTCGAToolbox.buildbin-libdir && mkdir RTCGAToolbox.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RTCGAToolbox.buildbin-libdir RTCGAToolbox_2.22.1.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL RTCGAToolbox_2.22.1.zip && rm RTCGAToolbox_2.22.1.tar.gz RTCGAToolbox_2.22.1.zip |
| StartedAt: 2021-10-14 10:27:40 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 10:28:33 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 52.4 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/RTCGAToolbox_2.22.1.tar.gz && rm -rf RTCGAToolbox.buildbin-libdir && mkdir RTCGAToolbox.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RTCGAToolbox.buildbin-libdir RTCGAToolbox_2.22.1.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL RTCGAToolbox_2.22.1.zip && rm RTCGAToolbox_2.22.1.tar.gz RTCGAToolbox_2.22.1.zip
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0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
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install for i386
* installing *source* package 'RTCGAToolbox' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'RTCGAToolbox'
finding HTML links ... done
CorResult-class html
DGEResult-class html
FirehoseCGHArray-class html
FirehoseData-class html
FirehoseGISTIC-class html
FirehoseMethylationArray-class html
FirehosemRNAArray-class html
RTCGAToolbox html
accmini html
biocExtract html
finding level-2 HTML links ... done
getBroadSubtypes html
getCNGECorrelation html
getData html
getDiffExpressedGenes html
getFirehoseAnalyzeDates html
getFirehoseData html
getFirehoseDatasets html
getFirehoseRunningDates html
getGISTICPeaks html
getLinks html
getMutationRate html
getReport html
getSurvival html
hg19.ucsc.gene.locations html
makeSummarizedExperimentFromGISTIC html
selectType html
showResults-CorResult html
showResults-DGEResult html
showResults html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'RTCGAToolbox' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RTCGAToolbox' as RTCGAToolbox_2.22.1.zip
* DONE (RTCGAToolbox)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'RTCGAToolbox' successfully unpacked and MD5 sums checked