Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:50 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the RProtoBufLib package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RProtoBufLib.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1625/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
RProtoBufLib 2.4.0 (landing page) Mike Jiang
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | WARNINGS | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |||||||||
Package: RProtoBufLib |
Version: 2.4.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL RProtoBufLib |
StartedAt: 2021-10-14 08:05:23 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 08:13:26 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 483.1 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL RProtoBufLib ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’ * installing *source* package ‘RProtoBufLib’ ... ** using staged installation checking for gcc... clang -mmacosx-version-min=10.13 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether clang -mmacosx-version-min=10.13 accepts -g... yes checking for clang -mmacosx-version-min=10.13 option to accept ISO C89... none needed checking whether we are using the GNU C++ compiler... yes checking whether clang++ -mmacosx-version-min=10.13 -std=gnu++14 accepts -g... yes untarring protobuf ... building protobuf... checking whether to enable maintainer-specific portions of Makefiles... yes checking build system type... x86_64-apple-darwin18.7.0 checking host system type... x86_64-apple-darwin18.7.0 checking target system type... x86_64-apple-darwin18.7.0 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... ./install-sh -c -d checking for gawk... no checking for mawk... no checking for nawk... no checking for awk... awk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether UID '505' is supported by ustar format... yes checking whether GID '20' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking whether make supports nested variables... (cached) yes checking for gcc... clang -mmacosx-version-min=10.13 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether clang -mmacosx-version-min=10.13 accepts -g... yes checking for clang -mmacosx-version-min=10.13 option to accept ISO C89... none needed checking whether clang -mmacosx-version-min=10.13 understands -c and -o together... rm: conftest.dSYM: is a directory yes checking whether make supports the include directive... yes (GNU style) checking dependency style of clang -mmacosx-version-min=10.13... gcc3 checking whether we are using the GNU C++ compiler... yes checking whether clang++ -mmacosx-version-min=10.13 -std=gnu++14 accepts -g... yes checking dependency style of clang++ -mmacosx-version-min=10.13 -std=gnu++14... gcc3 checking how to run the C preprocessor... clang -mmacosx-version-min=10.13 -E checking for gcc... gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... (cached) none needed checking whether gcc understands -c and -o together... (cached) yes checking dependency style of gcc... (cached) gcc3 checking how to run the C preprocessor... gcc -E checking how to run the C++ preprocessor... clang++ -mmacosx-version-min=10.13 -std=gnu++14 -E checking for g++... g++ checking whether we are using the GNU C++ compiler... (cached) yes checking whether g++ accepts -g... yes checking dependency style of g++... (cached) gcc3 checking how to run the C++ preprocessor... g++ -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... rm: conftest.dSYM: is a directory rm: conftest.dSYM: is a directory yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking for ar... ar checking the archiver (ar) interface... ar checking for gcc... gcc checking whether we are using the GNU Objective C compiler... yes checking whether gcc accepts -g... yes checking dependency style of gcc... gcc3 checking C++ compiler flags...... use user-supplied: -Wall -g -O2 checking whether __SUNPRO_CC is declared... no checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for fgrep... /usr/bin/grep -F checking for ld used by clang -mmacosx-version-min=10.13... /Library/Developer/CommandLineTools/usr/bin/ld checking if the linker (/Library/Developer/CommandLineTools/usr/bin/ld) is GNU ld... no checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 196608 checking how to convert x86_64-apple-darwin18.7.0 file names to x86_64-apple-darwin18.7.0 format... func_convert_file_noop checking how to convert x86_64-apple-darwin18.7.0 file names to toolchain format... func_convert_file_noop checking for /Library/Developer/CommandLineTools/usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... no checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from clang -mmacosx-version-min=10.13 object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for dsymutil... dsymutil checking for nmedit... nmedit checking for lipo... lipo checking for otool... otool checking for otool64... no checking for -single_module linker flag... yes checking for -exported_symbols_list linker flag... yes checking for -force_load linker flag... yes checking for dlfcn.h... yes checking for objdir... .libs checking if clang -mmacosx-version-min=10.13 supports -fno-rtti -fno-exceptions... yes checking for clang -mmacosx-version-min=10.13 option to produce PIC... -fno-common -DPIC checking if clang -mmacosx-version-min=10.13 PIC flag -fno-common -DPIC works... yes checking if clang -mmacosx-version-min=10.13 static flag -static works... no checking if clang -mmacosx-version-min=10.13 supports -c -o file.o... yes checking if clang -mmacosx-version-min=10.13 supports -c -o file.o... (cached) yes checking whether the clang -mmacosx-version-min=10.13 linker (/Library/Developer/CommandLineTools/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin18.7.0 dyld checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... clang++ -mmacosx-version-min=10.13 -std=gnu++14 -E checking for ld used by clang++ -mmacosx-version-min=10.13 -std=gnu++14... /Library/Developer/CommandLineTools/usr/bin/ld checking if the linker (/Library/Developer/CommandLineTools/usr/bin/ld) is GNU ld... no checking whether the clang++ -mmacosx-version-min=10.13 -std=gnu++14 linker (/Library/Developer/CommandLineTools/usr/bin/ld) supports shared libraries... yes checking for clang++ -mmacosx-version-min=10.13 -std=gnu++14 option to produce PIC... -fno-common -DPIC checking if clang++ -mmacosx-version-min=10.13 -std=gnu++14 PIC flag -fno-common -DPIC works... yes checking if clang++ -mmacosx-version-min=10.13 -std=gnu++14 static flag -static works... no checking if clang++ -mmacosx-version-min=10.13 -std=gnu++14 supports -c -o file.o... yes checking if clang++ -mmacosx-version-min=10.13 -std=gnu++14 supports -c -o file.o... (cached) yes checking whether the clang++ -mmacosx-version-min=10.13 -std=gnu++14 linker (/Library/Developer/CommandLineTools/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin18.7.0 dyld checking how to hardcode library paths into programs... immediate checking whether the linker supports version scripts... no checking for ANSI C header files... (cached) yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking for inttypes.h... (cached) yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for stdlib.h... (cached) yes checking for unistd.h... (cached) yes checking for working memcmp... yes checking for working strtod... yes checking for ftruncate... yes checking for memset... yes checking for mkdir... yes checking for strchr... yes checking for strerror... yes checking for strtol... yes checking zlib version... ok (1.2.0.4 or later) checking for library containing zlibVersion... -lz checking whether clang++ -mmacosx-version-min=10.13 -std=gnu++14 supports C++11 features by default... yes checking whether -latomic is needed... no checking whether clang -mmacosx-version-min=10.13 is Clang... yes checking whether Clang needs flag to prevent "argument unused" warning when linking with -pthread... no checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking whether more special flags are required for pthreads... no checking for PTHREAD_PRIO_INHERIT... yes checking the location of hash_map... <unordered_map> checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating benchmarks/Makefile config.status: creating conformance/Makefile config.status: creating protobuf.pc config.status: creating protobuf-lite.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands === configuring in third_party/googletest (/Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/protobuf-3.13.0/third_party/googletest) configure: running /bin/sh ./configure --disable-option-checking '--prefix=/Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build' '--enable-static=no' '--with-pic=yes' '--enable-shared=yes' '--libdir=/Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build/lib' 'CXX=clang++ -mmacosx-version-min=10.13 -std=gnu++14' 'CXXFLAGS=-Wall -g -O2' 'CC=clang -mmacosx-version-min=10.13' 'CFLAGS=-Wall -g -O2' --cache-file=/dev/null --srcdir=. checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... build-aux/install-sh -c -d checking for gawk... no checking for mawk... no checking for nawk... no checking for awk... awk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile === configuring in googletest (/Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/protobuf-3.13.0/third_party/googletest/googletest) configure: running /bin/sh ./configure --disable-option-checking '--prefix=/Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build' '--enable-static=no' '--with-pic=yes' '--enable-shared=yes' '--libdir=/Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build/lib' 'CXX=clang++ -mmacosx-version-min=10.13 -std=gnu++14' 'CXXFLAGS=-Wall -g -O2' 'CC=clang -mmacosx-version-min=10.13' 'CFLAGS=-Wall -g -O2' --cache-file=/dev/null --srcdir=. checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... build-aux/install-sh -c -d checking for gawk... no checking for mawk... no checking for nawk... no checking for awk... awk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... clang -mmacosx-version-min=10.13 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether clang -mmacosx-version-min=10.13 accepts -g... yes checking for clang -mmacosx-version-min=10.13 option to accept ISO C89... none needed checking whether clang -mmacosx-version-min=10.13 understands -c and -o together... rm: conftest.dSYM: is a directory yes checking whether make supports the include directive... yes (GNU style) checking dependency style of clang -mmacosx-version-min=10.13... gcc3 checking whether we are using the GNU C++ compiler... yes checking whether clang++ -mmacosx-version-min=10.13 -std=gnu++14 accepts -g... yes checking dependency style of clang++ -mmacosx-version-min=10.13 -std=gnu++14... gcc3 checking build system type... x86_64-apple-darwin18.7.0 checking host system type... x86_64-apple-darwin18.7.0 checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by clang -mmacosx-version-min=10.13... /Library/Developer/CommandLineTools/usr/bin/ld checking if the linker (/Library/Developer/CommandLineTools/usr/bin/ld) is GNU ld... no checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... rm: conftest.dSYM: is a directory BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 196608 checking how to convert x86_64-apple-darwin18.7.0 file names to x86_64-apple-darwin18.7.0 format... func_convert_file_noop checking how to convert x86_64-apple-darwin18.7.0 file names to toolchain format... func_convert_file_noop checking for /Library/Developer/CommandLineTools/usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... rm: conftest.dSYM: is a directory no checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from clang -mmacosx-version-min=10.13 object... rm: conftest.dSYM: is a directory ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for dsymutil... dsymutil checking for nmedit... nmedit checking for lipo... lipo checking for otool... otool checking for otool64... no checking for -single_module linker flag... yes checking for -exported_symbols_list linker flag... yes checking for -force_load linker flag... yes checking how to run the C preprocessor... clang -mmacosx-version-min=10.13 -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if clang -mmacosx-version-min=10.13 supports -fno-rtti -fno-exceptions... yes checking for clang -mmacosx-version-min=10.13 option to produce PIC... -fno-common -DPIC checking if clang -mmacosx-version-min=10.13 PIC flag -fno-common -DPIC works... yes checking if clang -mmacosx-version-min=10.13 static flag -static works... no checking if clang -mmacosx-version-min=10.13 supports -c -o file.o... yes checking if clang -mmacosx-version-min=10.13 supports -c -o file.o... (cached) yes checking whether the clang -mmacosx-version-min=10.13 linker (/Library/Developer/CommandLineTools/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin18.7.0 dyld checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... clang++ -mmacosx-version-min=10.13 -std=gnu++14 -E checking for ld used by clang++ -mmacosx-version-min=10.13 -std=gnu++14... /Library/Developer/CommandLineTools/usr/bin/ld checking if the linker (/Library/Developer/CommandLineTools/usr/bin/ld) is GNU ld... no checking whether the clang++ -mmacosx-version-min=10.13 -std=gnu++14 linker (/Library/Developer/CommandLineTools/usr/bin/ld) supports shared libraries... yes checking for clang++ -mmacosx-version-min=10.13 -std=gnu++14 option to produce PIC... -fno-common -DPIC checking if clang++ -mmacosx-version-min=10.13 -std=gnu++14 PIC flag -fno-common -DPIC works... yes checking if clang++ -mmacosx-version-min=10.13 -std=gnu++14 static flag -static works... no checking if clang++ -mmacosx-version-min=10.13 -std=gnu++14 supports -c -o file.o... yes checking if clang++ -mmacosx-version-min=10.13 -std=gnu++14 supports -c -o file.o... (cached) yes checking whether the clang++ -mmacosx-version-min=10.13 -std=gnu++14 linker (/Library/Developer/CommandLineTools/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin18.7.0 dyld checking how to hardcode library paths into programs... immediate checking for python... /usr/bin/python checking for the pthreads library -lpthreads... no checking whether pthreads work without any flags... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... -D_THREAD_SAFE checking whether to check for GCC pthread/shared inconsistencies... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating scripts/gtest-config config.status: creating build-aux/config.h config.status: executing depfiles commands config.status: executing libtool commands === configuring in googlemock (/Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/protobuf-3.13.0/third_party/googletest/googlemock) configure: running /bin/sh ./configure --disable-option-checking '--prefix=/Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build' '--enable-static=no' '--with-pic=yes' '--enable-shared=yes' '--libdir=/Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build/lib' 'CXX=clang++ -mmacosx-version-min=10.13 -std=gnu++14' 'CXXFLAGS=-Wall -g -O2' 'CC=clang -mmacosx-version-min=10.13' 'CFLAGS=-Wall -g -O2' --cache-file=/dev/null --srcdir=. checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... build-aux/install-sh -c -d checking for gawk... no checking for mawk... no checking for nawk... no checking for awk... awk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... clang -mmacosx-version-min=10.13 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether clang -mmacosx-version-min=10.13 accepts -g... yes checking for clang -mmacosx-version-min=10.13 option to accept ISO C89... none needed checking whether clang -mmacosx-version-min=10.13 understands -c and -o together... rm: conftest.dSYM: is a directory yes checking whether make supports the include directive... yes (GNU style) checking dependency style of clang -mmacosx-version-min=10.13... gcc3 checking whether we are using the GNU C++ compiler... yes checking whether clang++ -mmacosx-version-min=10.13 -std=gnu++14 accepts -g... yes checking dependency style of clang++ -mmacosx-version-min=10.13 -std=gnu++14... gcc3 checking build system type... x86_64-apple-darwin18.7.0 checking host system type... x86_64-apple-darwin18.7.0 checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by clang -mmacosx-version-min=10.13... /Library/Developer/CommandLineTools/usr/bin/ld checking if the linker (/Library/Developer/CommandLineTools/usr/bin/ld) is GNU ld... no checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... rm: conftest.dSYM: is a directory BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 196608 checking how to convert x86_64-apple-darwin18.7.0 file names to x86_64-apple-darwin18.7.0 format... func_convert_file_noop checking how to convert x86_64-apple-darwin18.7.0 file names to toolchain format... func_convert_file_noop checking for /Library/Developer/CommandLineTools/usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... rm: conftest.dSYM: is a directory no checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from clang -mmacosx-version-min=10.13 object... rm: conftest.dSYM: is a directory ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for dsymutil... dsymutil checking for nmedit... nmedit checking for lipo... lipo checking for otool... otool checking for otool64... no checking for -single_module linker flag... yes checking for -exported_symbols_list linker flag... yes checking for -force_load linker flag... yes checking how to run the C preprocessor... clang -mmacosx-version-min=10.13 -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if clang -mmacosx-version-min=10.13 supports -fno-rtti -fno-exceptions... yes checking for clang -mmacosx-version-min=10.13 option to produce PIC... -fno-common -DPIC checking if clang -mmacosx-version-min=10.13 PIC flag -fno-common -DPIC works... yes checking if clang -mmacosx-version-min=10.13 static flag -static works... no checking if clang -mmacosx-version-min=10.13 supports -c -o file.o... yes checking if clang -mmacosx-version-min=10.13 supports -c -o file.o... (cached) yes checking whether the clang -mmacosx-version-min=10.13 linker (/Library/Developer/CommandLineTools/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin18.7.0 dyld checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... clang++ -mmacosx-version-min=10.13 -std=gnu++14 -E checking for ld used by clang++ -mmacosx-version-min=10.13 -std=gnu++14... /Library/Developer/CommandLineTools/usr/bin/ld checking if the linker (/Library/Developer/CommandLineTools/usr/bin/ld) is GNU ld... no checking whether the clang++ -mmacosx-version-min=10.13 -std=gnu++14 linker (/Library/Developer/CommandLineTools/usr/bin/ld) supports shared libraries... yes checking for clang++ -mmacosx-version-min=10.13 -std=gnu++14 option to produce PIC... -fno-common -DPIC checking if clang++ -mmacosx-version-min=10.13 -std=gnu++14 PIC flag -fno-common -DPIC works... yes checking if clang++ -mmacosx-version-min=10.13 -std=gnu++14 static flag -static works... no checking if clang++ -mmacosx-version-min=10.13 -std=gnu++14 supports -c -o file.o... yes checking if clang++ -mmacosx-version-min=10.13 -std=gnu++14 supports -c -o file.o... (cached) yes checking whether the clang++ -mmacosx-version-min=10.13 -std=gnu++14 linker (/Library/Developer/CommandLineTools/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin18.7.0 dyld checking how to hardcode library paths into programs... immediate checking for python... /usr/bin/python checking for the pthreads library -lpthreads... no checking whether pthreads work without any flags... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... -D_THREAD_SAFE checking whether to check for GCC pthread/shared inconsistencies... no checking for gtest-config... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating scripts/gmock-config config.status: creating build-aux/config.h config.status: executing depfiles commands config.status: executing libtool commands Making install in . make[2]: Nothing to be done for `install-exec-am'. ./install-sh -c -d '/Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build/lib/pkgconfig' /usr/bin/install -c -m 644 protobuf.pc protobuf-lite.pc '/Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build/lib/pkgconfig' Making install in src CXX google/protobuf/compiler/main.o CXX google/protobuf/stubs/bytestream.lo CXX google/protobuf/stubs/common.lo CXX google/protobuf/stubs/int128.lo CXX google/protobuf/io/io_win32.lo CXX google/protobuf/stubs/status.lo CXX google/protobuf/stubs/statusor.lo CXX google/protobuf/stubs/stringpiece.lo CXX google/protobuf/stubs/stringprintf.lo CXX google/protobuf/stubs/structurally_valid.lo CXX google/protobuf/stubs/strutil.lo CXX google/protobuf/stubs/time.lo CXX google/protobuf/any_lite.lo CXX google/protobuf/arena.lo CXX google/protobuf/extension_set.lo CXX google/protobuf/generated_enum_util.lo CXX google/protobuf/generated_message_util.lo CXX google/protobuf/generated_message_table_driven_lite.lo CXX google/protobuf/implicit_weak_message.lo CXX google/protobuf/message_lite.lo CXX google/protobuf/parse_context.lo CXX google/protobuf/repeated_field.lo CXX google/protobuf/wire_format_lite.lo CXX google/protobuf/io/coded_stream.lo CXX google/protobuf/io/strtod.lo CXX google/protobuf/io/zero_copy_stream.lo CXX google/protobuf/io/zero_copy_stream_impl.lo CXX google/protobuf/io/zero_copy_stream_impl_lite.lo CXX google/protobuf/any.pb.lo CXX google/protobuf/api.pb.lo CXX google/protobuf/any.lo CXX google/protobuf/descriptor.lo CXX google/protobuf/descriptor_database.lo CXX google/protobuf/descriptor.pb.lo CXX google/protobuf/duration.pb.lo CXX google/protobuf/dynamic_message.lo CXX google/protobuf/empty.pb.lo CXX google/protobuf/extension_set_heavy.lo CXX google/protobuf/field_mask.pb.lo CXX google/protobuf/generated_message_reflection.lo CXX google/protobuf/generated_message_table_driven.lo CXX google/protobuf/map_field.lo CXX google/protobuf/message.lo CXX google/protobuf/reflection_ops.lo CXX google/protobuf/service.lo CXX google/protobuf/source_context.pb.lo CXX google/protobuf/struct.pb.lo CXX google/protobuf/stubs/substitute.lo CXX google/protobuf/text_format.lo CXX google/protobuf/timestamp.pb.lo CXX google/protobuf/type.pb.lo CXX google/protobuf/unknown_field_set.lo CXX google/protobuf/wire_format.lo CXX google/protobuf/wrappers.pb.lo CXX google/protobuf/io/gzip_stream.lo CXX google/protobuf/io/printer.lo CXX google/protobuf/io/tokenizer.lo CXX google/protobuf/compiler/importer.lo CXX google/protobuf/compiler/parser.lo CXX google/protobuf/util/delimited_message_util.lo CXX google/protobuf/util/field_comparator.lo CXX google/protobuf/util/field_mask_util.lo CXX google/protobuf/util/internal/datapiece.lo CXX google/protobuf/util/internal/default_value_objectwriter.lo CXX google/protobuf/util/internal/error_listener.lo CXX google/protobuf/util/internal/field_mask_utility.lo CXX google/protobuf/util/internal/json_escaping.lo CXX google/protobuf/util/internal/json_objectwriter.lo CXX google/protobuf/util/internal/json_stream_parser.lo CXX google/protobuf/util/internal/object_writer.lo CXX google/protobuf/util/internal/protostream_objectsource.lo CXX google/protobuf/util/internal/protostream_objectwriter.lo CXX google/protobuf/util/internal/proto_writer.lo CXX google/protobuf/util/internal/type_info.lo CXX google/protobuf/util/internal/type_info_test_helper.lo CXX google/protobuf/util/internal/utility.lo CXX google/protobuf/util/json_util.lo CXX google/protobuf/util/message_differencer.lo CXX google/protobuf/util/time_util.lo CXX google/protobuf/util/type_resolver_util.lo CXXLD libprotobuf.la CXX google/protobuf/compiler/code_generator.lo CXX google/protobuf/compiler/command_line_interface.lo CXX google/protobuf/compiler/plugin.lo CXX google/protobuf/compiler/plugin.pb.lo CXX google/protobuf/compiler/subprocess.lo CXX google/protobuf/compiler/zip_writer.lo CXX google/protobuf/compiler/cpp/cpp_enum.lo CXX google/protobuf/compiler/cpp/cpp_enum_field.lo CXX google/protobuf/compiler/cpp/cpp_extension.lo CXX google/protobuf/compiler/cpp/cpp_field.lo CXX google/protobuf/compiler/cpp/cpp_file.lo CXX google/protobuf/compiler/cpp/cpp_generator.lo CXX google/protobuf/compiler/cpp/cpp_helpers.lo google/protobuf/compiler/cpp/cpp_helpers.cc:171:6: warning: function 'Base63Char' is not needed and will not be emitted [-Wunneeded-internal-declaration] char Base63Char(int value) { ^ 1 warning generated. CXX google/protobuf/compiler/cpp/cpp_map_field.lo CXX google/protobuf/compiler/cpp/cpp_message.lo CXX google/protobuf/compiler/cpp/cpp_message_field.lo CXX google/protobuf/compiler/cpp/cpp_padding_optimizer.lo CXX google/protobuf/compiler/cpp/cpp_primitive_field.lo CXX google/protobuf/compiler/cpp/cpp_service.lo CXX google/protobuf/compiler/cpp/cpp_string_field.lo CXX google/protobuf/compiler/java/java_context.lo CXX google/protobuf/compiler/java/java_enum.lo CXX google/protobuf/compiler/java/java_enum_lite.lo CXX google/protobuf/compiler/java/java_enum_field.lo CXX google/protobuf/compiler/java/java_enum_field_lite.lo CXX google/protobuf/compiler/java/java_extension.lo CXX google/protobuf/compiler/java/java_extension_lite.lo CXX google/protobuf/compiler/java/java_field.lo CXX google/protobuf/compiler/java/java_file.lo CXX google/protobuf/compiler/java/java_generator.lo CXX google/protobuf/compiler/java/java_generator_factory.lo CXX google/protobuf/compiler/java/java_helpers.lo CXX google/protobuf/compiler/java/java_map_field.lo CXX google/protobuf/compiler/java/java_map_field_lite.lo CXX google/protobuf/compiler/java/java_message.lo CXX google/protobuf/compiler/java/java_message_lite.lo CXX google/protobuf/compiler/java/java_message_builder.lo CXX google/protobuf/compiler/java/java_message_builder_lite.lo CXX google/protobuf/compiler/java/java_message_field.lo CXX google/protobuf/compiler/java/java_message_field_lite.lo CXX google/protobuf/compiler/java/java_name_resolver.lo CXX google/protobuf/compiler/java/java_primitive_field.lo CXX google/protobuf/compiler/java/java_primitive_field_lite.lo CXX google/protobuf/compiler/java/java_shared_code_generator.lo CXX google/protobuf/compiler/java/java_service.lo CXX google/protobuf/compiler/java/java_string_field.lo CXX google/protobuf/compiler/java/java_string_field_lite.lo CXX google/protobuf/compiler/java/java_doc_comment.lo CXX google/protobuf/compiler/js/js_generator.lo CXX google/protobuf/compiler/js/well_known_types_embed.lo CXX google/protobuf/compiler/objectivec/objectivec_enum.lo CXX google/protobuf/compiler/objectivec/objectivec_enum_field.lo CXX google/protobuf/compiler/objectivec/objectivec_extension.lo CXX google/protobuf/compiler/objectivec/objectivec_field.lo CXX google/protobuf/compiler/objectivec/objectivec_file.lo CXX google/protobuf/compiler/objectivec/objectivec_generator.lo CXX google/protobuf/compiler/objectivec/objectivec_helpers.lo CXX google/protobuf/compiler/objectivec/objectivec_map_field.lo CXX google/protobuf/compiler/objectivec/objectivec_message.lo CXX google/protobuf/compiler/objectivec/objectivec_message_field.lo CXX google/protobuf/compiler/objectivec/objectivec_oneof.lo CXX google/protobuf/compiler/objectivec/objectivec_primitive_field.lo CXX google/protobuf/compiler/php/php_generator.lo CXX google/protobuf/compiler/python/python_generator.lo CXX google/protobuf/compiler/ruby/ruby_generator.lo CXX google/protobuf/compiler/csharp/csharp_doc_comment.lo CXX google/protobuf/compiler/csharp/csharp_enum.lo CXX google/protobuf/compiler/csharp/csharp_enum_field.lo CXX google/protobuf/compiler/csharp/csharp_field_base.lo CXX google/protobuf/compiler/csharp/csharp_generator.lo CXX google/protobuf/compiler/csharp/csharp_helpers.lo CXX google/protobuf/compiler/csharp/csharp_map_field.lo CXX google/protobuf/compiler/csharp/csharp_message.lo CXX google/protobuf/compiler/csharp/csharp_message_field.lo CXX google/protobuf/compiler/csharp/csharp_primitive_field.lo CXX google/protobuf/compiler/csharp/csharp_reflection_class.lo CXX google/protobuf/compiler/csharp/csharp_repeated_enum_field.lo CXX google/protobuf/compiler/csharp/csharp_repeated_message_field.lo CXX google/protobuf/compiler/csharp/csharp_repeated_primitive_field.lo CXX google/protobuf/compiler/csharp/csharp_source_generator_base.lo In file included from google/protobuf/compiler/csharp/csharp_source_generator_base.cc:39: ./google/protobuf/compiler/csharp/csharp_source_generator_base.h:62:25: warning: private field 'descriptor_' is not used [-Wunused-private-field] const FileDescriptor* descriptor_; ^ 1 warning generated. CXX google/protobuf/compiler/csharp/csharp_wrapper_field.lo CXXLD libprotoc.la CXXLD protoc CXXLD libprotobuf-lite.la .././install-sh -c -d '/Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build/lib' /bin/sh ../libtool --mode=install /usr/bin/install -c libprotobuf-lite.la libprotobuf.la libprotoc.la '/Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build/lib' libtool: install: /usr/bin/install -c .libs/libprotobuf-lite.24.dylib /Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build/lib/libprotobuf-lite.24.dylib libtool: install: (cd /Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build/lib && { ln -s -f libprotobuf-lite.24.dylib libprotobuf-lite.dylib || { rm -f libprotobuf-lite.dylib && ln -s libprotobuf-lite.24.dylib libprotobuf-lite.dylib; }; }) libtool: install: /usr/bin/install -c .libs/libprotobuf-lite.lai /Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build/lib/libprotobuf-lite.la libtool: install: /usr/bin/install -c .libs/libprotobuf.24.dylib /Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build/lib/libprotobuf.24.dylib libtool: install: (cd /Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build/lib && { ln -s -f libprotobuf.24.dylib libprotobuf.dylib || { rm -f libprotobuf.dylib && ln -s libprotobuf.24.dylib libprotobuf.dylib; }; }) libtool: install: /usr/bin/install -c .libs/libprotobuf.lai /Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build/lib/libprotobuf.la libtool: install: /usr/bin/install -c .libs/libprotoc.24.dylib /Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build/lib/libprotoc.24.dylib libtool: install: (cd /Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build/lib && { ln -s -f libprotoc.24.dylib libprotoc.dylib || { rm -f libprotoc.dylib && ln -s libprotoc.24.dylib libprotoc.dylib; }; }) libtool: install: /usr/bin/install -c .libs/libprotoc.lai /Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build/lib/libprotoc.la .././install-sh -c -d '/Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build/bin' /bin/sh ../libtool --mode=install /usr/bin/install -c protoc '/Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build/bin' libtool: install: /usr/bin/install -c .libs/protoc /Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build/bin/protoc .././install-sh -c -d '/Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build/include' .././install-sh -c -d '/Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf' /usr/bin/install -c -m 644 google/protobuf/descriptor.proto google/protobuf/any.proto google/protobuf/api.proto google/protobuf/duration.proto google/protobuf/empty.proto google/protobuf/field_mask.proto google/protobuf/source_context.proto google/protobuf/struct.proto google/protobuf/timestamp.proto google/protobuf/type.proto google/protobuf/wrappers.proto '/Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf' .././install-sh -c -d '/Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/compiler' /usr/bin/install -c -m 644 google/protobuf/compiler/plugin.proto '/Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/compiler' .././install-sh -c -d '/Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build/include' .././install-sh -c -d '/Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf' /usr/bin/install -c -m 644 google/protobuf/any.pb.h google/protobuf/api.pb.h google/protobuf/any.h google/protobuf/arena.h google/protobuf/arena_impl.h google/protobuf/arenastring.h google/protobuf/descriptor_database.h google/protobuf/descriptor.h google/protobuf/descriptor.pb.h google/protobuf/duration.pb.h google/protobuf/dynamic_message.h google/protobuf/empty.pb.h google/protobuf/extension_set.h google/protobuf/extension_set_inl.h google/protobuf/field_mask.pb.h google/protobuf/generated_enum_reflection.h google/protobuf/generated_enum_util.h google/protobuf/generated_message_reflection.h google/protobuf/generated_message_table_driven.h google/protobuf/generated_message_util.h google/protobuf/has_bits.h google/protobuf/implicit_weak_message.h google/protobuf/inlined_string_field.h google/protobuf/map_entry.h google/protobuf/map_entry_lite.h google/protobuf/map_field.h google/protobuf/map_field_inl.h google/protobuf/map_field_lite.h google/protobuf/map.h google/protobuf/map_type_handler.h google/protobuf/message.h google/protobuf/message_lite.h google/protobuf/metadata.h google/protobuf/metadata_lite.h google/protobuf/parse_context.h google/protobuf/port.h google/protobuf/port_def.inc google/protobuf/port_undef.inc google/protobuf/reflection.h google/protobuf/reflection_ops.h '/Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf' .././install-sh -c -d '/Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/compiler/python' /usr/bin/install -c -m 644 google/protobuf/compiler/python/python_generator.h '/Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/compiler/python' .././install-sh -c -d '/Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/compiler/php' /usr/bin/install -c -m 644 google/protobuf/compiler/php/php_generator.h '/Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/compiler/php' .././install-sh -c -d '/Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/compiler/cpp' /usr/bin/install -c -m 644 google/protobuf/compiler/cpp/cpp_generator.h '/Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/compiler/cpp' .././install-sh -c -d '/Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/compiler/objectivec' /usr/bin/install -c -m 644 google/protobuf/compiler/objectivec/objectivec_generator.h google/protobuf/compiler/objectivec/objectivec_helpers.h '/Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/compiler/objectivec' .././install-sh -c -d '/Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/stubs' /usr/bin/install -c -m 644 google/protobuf/stubs/callback.h google/protobuf/stubs/bytestream.h google/protobuf/stubs/casts.h google/protobuf/stubs/common.h google/protobuf/stubs/fastmem.h google/protobuf/stubs/hash.h google/protobuf/stubs/logging.h google/protobuf/stubs/macros.h google/protobuf/stubs/map_util.h google/protobuf/stubs/mutex.h google/protobuf/stubs/once.h google/protobuf/stubs/platform_macros.h google/protobuf/stubs/port.h google/protobuf/stubs/status.h google/protobuf/stubs/stl_util.h google/protobuf/stubs/stringpiece.h google/protobuf/stubs/strutil.h google/protobuf/stubs/template_util.h '/Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/stubs' .././install-sh -c -d '/Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/io' /usr/bin/install -c -m 644 google/protobuf/io/io_win32.h google/protobuf/io/coded_stream.h google/protobuf/io/gzip_stream.h google/protobuf/io/printer.h google/protobuf/io/strtod.h google/protobuf/io/tokenizer.h google/protobuf/io/zero_copy_stream.h google/protobuf/io/zero_copy_stream_impl.h google/protobuf/io/zero_copy_stream_impl_lite.h '/Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/io' .././install-sh -c -d '/Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf' /usr/bin/install -c -m 644 google/protobuf/repeated_field.h google/protobuf/service.h google/protobuf/source_context.pb.h google/protobuf/struct.pb.h google/protobuf/text_format.h google/protobuf/timestamp.pb.h google/protobuf/type.pb.h google/protobuf/unknown_field_set.h google/protobuf/wire_format.h google/protobuf/wire_format_lite.h google/protobuf/wrappers.pb.h '/Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf' .././install-sh -c -d '/Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/compiler/java' /usr/bin/install -c -m 644 google/protobuf/compiler/java/java_generator.h google/protobuf/compiler/java/java_names.h '/Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/compiler/java' .././install-sh -c -d '/Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/compiler' /usr/bin/install -c -m 644 google/protobuf/compiler/code_generator.h google/protobuf/compiler/command_line_interface.h google/protobuf/compiler/importer.h google/protobuf/compiler/parser.h google/protobuf/compiler/plugin.h google/protobuf/compiler/plugin.pb.h '/Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/compiler' .././install-sh -c -d '/Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/util' /usr/bin/install -c -m 644 google/protobuf/util/type_resolver.h google/protobuf/util/delimited_message_util.h google/protobuf/util/field_comparator.h google/protobuf/util/field_mask_util.h google/protobuf/util/json_util.h google/protobuf/util/time_util.h google/protobuf/util/type_resolver_util.h google/protobuf/util/message_differencer.h '/Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/util' .././install-sh -c -d '/Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/compiler/ruby' /usr/bin/install -c -m 644 google/protobuf/compiler/ruby/ruby_generator.h '/Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/compiler/ruby' .././install-sh -c -d '/Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/compiler/csharp' /usr/bin/install -c -m 644 google/protobuf/compiler/csharp/csharp_generator.h google/protobuf/compiler/csharp/csharp_names.h '/Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/compiler/csharp' .././install-sh -c -d '/Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/compiler/js' /usr/bin/install -c -m 644 google/protobuf/compiler/js/js_generator.h google/protobuf/compiler/js/well_known_types_embed.h '/Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/compiler/js' configure: creating ./config.status config.status: creating src/Makevars ** libs clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -fPIC -I../inst/include/ -I/Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build/include/ -o GatingSet_pb_lib/libGatingSet.pb.dylib GatingSet_pb_lib/GatingSet.pb.cc mkdir -p "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/00LOCK-RProtoBufLib/00new/RProtoBufLib/include" cp -r /Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build/include/google /Library/Frameworks/R.framework/Versions/4.1/Resources/library/00LOCK-RProtoBufLib/00new/RProtoBufLib/include mkdir -p "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/00LOCK-RProtoBufLib/00new/RProtoBufLib/lib/" cp /Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build/lib/libprotobuf* /Library/Frameworks/R.framework/Versions/4.1/Resources/library/00LOCK-RProtoBufLib/00new/RProtoBufLib/lib/ cp GatingSet_pb_lib/libGatingSet.pb.dylib /Library/Frameworks/R.framework/Versions/4.1/Resources/library/00LOCK-RProtoBufLib/00new/RProtoBufLib/lib//libGatingSet.pb.dylib clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I/Users/biocbuild/bbs-3.13-bioc/meat/RProtoBufLib/src/pb_build/include/ -I/usr/local/include -fPIC -Wall -g -O2 -c dummy.cpp -o dummy.o clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o RProtoBufLib.so dummy.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Library/Frameworks/R.framework/Versions/4.1/Resources/library/00LOCK-RProtoBufLib/00new/RProtoBufLib/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RProtoBufLib)