| Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:50 -0400 (Fri, 15 Oct 2021).
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To the developers/maintainers of the RNASeqR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RNASeqR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1612/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| RNASeqR 1.10.0 (landing page) Kuan-Hao Chao
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | ... NOT SUPPORTED ... | ||||||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| Package: RNASeqR |
| Version: 1.10.0 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data RNASeqR |
| StartedAt: 2021-10-14 14:28:57 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 14:30:33 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 96.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data RNASeqR
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* checking for file ‘RNASeqR/DESCRIPTION’ ... OK
* preparing ‘RNASeqR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘RNASeqR.Rmd’ using rmarkdown
Loading required package: ggplot2
Loading required package: pathview
##############################################################################
Pathview is an open source software package distributed under GNU General
Public License version 3 (GPLv3). Details of GPLv3 is available at
http://www.gnu.org/licenses/gpl-3.0.html. Particullary, users are required to
formally cite the original Pathview paper (not just mention it) in publications
or products. For details, do citation("pathview") within R.
The pathview downloads and uses KEGG data. Non-academic uses may require a KEGG
license agreement (details at http://www.kegg.jp/kegg/legal.html).
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Loading required package: edgeR
Loading required package: limma
Welcome to RNASeqR
************** Checking input parameters ************
(✔) : Input parameters are all not NA !!
************** Checking operating system type ************
(✔) : Your system operating system is 'osx'
************** Checking python version ************
Quitting from lines 244-252 (RNASeqR.Rmd)
Error: processing vignette 'RNASeqR.Rmd' failed with diagnostics:
invalid argument type
--- failed re-building ‘RNASeqR.Rmd’
SUMMARY: processing the following file failed:
‘RNASeqR.Rmd’
Error: Vignette re-building failed.
Execution halted