| Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:19 -0400 (Fri, 15 Oct 2021).
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To the developers/maintainers of the RMassBank package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RMassBank.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1594/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| RMassBank 3.2.0 (landing page) RMassBank at Eawag
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK |  | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: RMassBank |
| Version: 3.2.0 |
| Command: rm -rf RMassBank.buildbin-libdir && mkdir RMassBank.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe --arch x64 CMD INSTALL --no-multiarch --build --library=RMassBank.buildbin-libdir RMassBank_3.2.0.tar.gz |
| StartedAt: 2021-10-15 11:26:10 -0400 (Fri, 15 Oct 2021) |
| EndedAt: 2021-10-15 11:27:15 -0400 (Fri, 15 Oct 2021) |
| EllapsedTime: 65.7 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: RMassBank_3.2.0.zip |
| PackageFileSize: 2.27 MiB |
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### Running command:
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### rm -rf RMassBank.buildbin-libdir && mkdir RMassBank.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe --arch x64 CMD INSTALL --no-multiarch --build --library=RMassBank.buildbin-libdir RMassBank_3.2.0.tar.gz
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* installing *source* package 'RMassBank' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'RMassBank'
finding HTML links ... done
CTS.externalIdSubset html
CTS.externalIdTypes html
RmbDefaultSettings html
RmbSettings html
add.formula html
addMB html
addPeaks html
addPeaksManually html
addProperty html
aggregateSpectra html
analyzeMsMs html
annotator.default html
archiveResults html
checkIsotopes html
checkSpectra html
cleanElnoise html
combineMultiplicities html
createMolfile html
dbe html
deprofile html
dot-buildRecord.RmbSpectraSet html
dot-parseTitleString html
finding level-2 HTML links ... done
Rd warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/Rtmp0oQMOx/R.INSTALL7a707c603e60/RMassBank/man/dot-parseTitleString.Rd:38: missing link 'compileRecord'
dot-updateObject.RmbSpectrum2.formulaSource
html
exportMassbank html
Rd warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/Rtmp0oQMOx/R.INSTALL7a707c603e60/RMassBank/man/exportMassbank.Rd:11: missing link 'compileRecord'
Rd warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/Rtmp0oQMOx/R.INSTALL7a707c603e60/RMassBank/man/exportMassbank.Rd:52: missing link 'compileRecord'
fillback html
filterLowaccResults html
filterMultiplicity html
filterPeakSatellites html
filterPeaksMultiplicity html
findEIC html
findMass html
findMsMsHR html
findMsMsHR.direct html
findMsMsHR.ticms2 html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/RMassBank.buildbin-libdir/00LOCK-RMassBank/00new/RMassBank/help/findMsMsHR.ticMS2.html
findMsMsHRperxcms html
findMz html
findMz.formula html
findProgress html
flatten html
formulastring.to.list html
gatherData html
gatherDataBabel html
gatherDataUnknown html
gatherPubChem html
getAnalyticalInfo html
Rd warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/Rtmp0oQMOx/R.INSTALL7a707c603e60/RMassBank/man/getAnalyticalInfo.Rd:71: missing link 'compileRecord'
getCSID html
getCactus html
getCompTox html
getCtsKey html
getCtsRecord html
getData html
getMolecule html
getPcId html
is.valid.formula html
loadInfolists html
loadList html
makeMollist html
makePeaksCache html
makeRecalibration html
mbWorkflow html
mbWorkspace-class html
mergePeaks.df html
msmsRead.RAW html
msmsRead html
msmsWorkflow html
msmsWorkspace-class html
newMbWorkspace html
newMsmsWorkspace html
order.formula html
parseMassBank html
parseMbRecord html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/RMassBank.buildbin-libdir/00LOCK-RMassBank/00new/RMassBank/help/parseMassBank.html
peaksMatched html
peaksUnmatched html
plotMbWorkspaces html
plotRecalibration html
ppm html
problematicPeaks html
processProblematicPeaks html
progressBarHook html
reanalyzeFailpeaks html
recalibrate html
recalibrate.addMS1data html
selectPeaks html
selectSpectra html
setData html
smiles2mass html
spectraCount html
to.limits.rcdk html
toMassbank html
Rd warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/Rtmp0oQMOx/R.INSTALL7a707c603e60/RMassBank/man/toMassbank.Rd:79: missing link 'compileRecord'
toRMB html
updateSettings html
validate html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'RMassBank' as RMassBank_3.2.0.zip
* DONE (RMassBank)