Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:18 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the RCM package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RCM.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1521/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
RCM 1.8.0 (landing page) Joris Meys
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: RCM |
Version: 1.8.0 |
Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:RCM.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings RCM_1.8.0.tar.gz |
StartedAt: 2021-10-15 04:11:01 -0400 (Fri, 15 Oct 2021) |
EndedAt: 2021-10-15 04:20:35 -0400 (Fri, 15 Oct 2021) |
EllapsedTime: 574.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: RCM.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:RCM.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings RCM_1.8.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/RCM.Rcheck' * using R version 4.1.1 (2021-08-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'RCM/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'RCM' version '1.8.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'RCM' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed getDevianceRes 11.10 0.14 11.23 plotRespFun 8.49 0.08 8.69 RCM 8.34 0.11 8.46 addOrthProjection 8.23 0.08 8.32 plot.RCM 7.62 0.02 7.64 liks 7.17 0.01 7.18 extractCoord 6.83 0.13 6.97 inertia 6.64 0.02 6.66 RCM_NB 5.13 0.02 5.14 ** running examples for arch 'x64' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed getDevianceRes 11.30 0.01 11.31 plotRespFun 8.45 0.02 8.51 RCM 8.35 0.06 8.41 addOrthProjection 7.36 0.01 7.37 extractCoord 7.28 0.02 7.30 plot.RCM 6.62 0.00 6.63 inertia 6.37 0.00 6.38 liks 6.13 0.00 6.14 RCM_NB 5.72 0.02 5.73 * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'testthat.R' OK ** running tests for arch 'x64' ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
RCM.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/RCM_1.8.0.tar.gz && rm -rf RCM.buildbin-libdir && mkdir RCM.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RCM.buildbin-libdir RCM_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL RCM_1.8.0.zip && rm RCM_1.8.0.tar.gz RCM_1.8.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 23 2734k 23 631k 0 0 1589k 0 0:00:01 --:--:-- 0:00:01 1590k 100 2734k 100 2734k 0 0 2883k 0 --:--:-- --:--:-- --:--:-- 2884k install for i386 * installing *source* package 'RCM' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'RCM' finding HTML links ... done JacCol_constr html JacCol_constr_noLab html LR_nb html LR_nb_Jac html NBalphaInfl html NBcolInfl html NBjacobianAbunds html NBjacobianCol html NBjacobianColNP html NBjacobianLibSizes html NBjacobianPsi html NBjacobianRow html NBpsiInfl html NBrowInfl html RCM html RCM_NB html Zeller html addOrthProjection html arrayprod html buildCentMat html buildConfMat html buildConfMat.character html buildConfMat.data.frame html buildCovMat html buildDesign html checkAlias html constrCorresp html correctXMissingness html dLR_nb html dNBabunds html dNBlibSizes html dNBllcol html dNBllcolNP html dNBllcol_constr html dNBllcol_constr_noLab html dNBllrow html dNBpsis html deviances html ellipseCoord html estDisp html estNBparams html estNBparamsNoLab html estNPresp html extractCoord html extractE html filterConfounders html getDevMat html getDevianceRes html getInflCol html getInflRow html getInt html getLogLik html getModelMat html getRowMat html heq_nb html heq_nb_jac html indentPlot html inertia html liks html plot.RCM html plotRespFun html residualPlot html respFunJacMat html respFunScoreMat html rowMultiply html seq_k html trimOnConfounders html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'RCM' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'RCM' as RCM_1.8.0.zip * DONE (RCM) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'RCM' successfully unpacked and MD5 sums checked
RCM.Rcheck/tests_i386/testthat.Rout R version 4.1.1 (2021-08-10) -- "Kick Things" Copyright (C) 2021 The R Foundation for Statistical Computing Platform: i386-w64-mingw32/i386 (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(RCM) > > test_check("RCM") [ FAIL 0 | WARN 14 | SKIP 0 | PASS 25 ] > > proc.time() user system elapsed 69.10 1.17 70.26 |
RCM.Rcheck/tests_x64/testthat.Rout R version 4.1.1 (2021-08-10) -- "Kick Things" Copyright (C) 2021 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(RCM) > > test_check("RCM") [ FAIL 0 | WARN 14 | SKIP 0 | PASS 25 ] > > proc.time() user system elapsed 72.03 0.53 72.56 |
RCM.Rcheck/examples_i386/RCM-Ex.timings
|
RCM.Rcheck/examples_x64/RCM-Ex.timings
|