Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:49 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the RCASPAR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RCASPAR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1516/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
RCASPAR 1.38.0 (landing page) Douaa Mugahid
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: RCASPAR |
Version: 1.38.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:RCASPAR.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings RCASPAR_1.38.0.tar.gz |
StartedAt: 2021-10-14 22:54:02 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 22:54:40 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 37.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: RCASPAR.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:RCASPAR.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings RCASPAR_1.38.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.13-bioc/meat/RCASPAR.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘RCASPAR/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘RCASPAR’ version ‘1.38.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .git_fetch_output.txt .git_merge_output.txt These were most likely included in error. See section ‘Package structure’ in the ‘Writing R Extensions’ manual. * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘RCASPAR’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Title field: should not end in a period. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE kmplt_svrl: no visible global function definition for ‘lines’ kmplt_svrl: no visible global function definition for ‘legend’ logrnk: no visible global function definition for ‘pchisq’ pltprior: no visible global function definition for ‘persp’ weights_BLH: no visible global function definition for ‘optim’ Undefined global functions or variables: legend lines optim pchisq persp Consider adding importFrom("graphics", "legend", "lines", "persp") importFrom("stats", "optim", "pchisq") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See ‘/Users/biocbuild/bbs-3.13-bioc/meat/RCASPAR.Rcheck/00check.log’ for details.
RCASPAR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL RCASPAR ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’ * installing *source* package ‘RCASPAR’ ... ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RCASPAR)
RCASPAR.Rcheck/RCASPAR-Ex.timings
name | user | system | elapsed | |
Bergamaschi | 0.021 | 0.005 | 0.027 | |
RCASPAR-package | 0.597 | 0.043 | 0.641 | |
STpredictor_BLH | 0.064 | 0.016 | 0.081 | |
STpredictor_xvBLH | 0.587 | 0.030 | 0.618 | |
deriv_weight_estimator_BLH | 0.003 | 0.001 | 0.004 | |
deriv_weight_estimator_BLH_noprior | 0.003 | 0.001 | 0.004 | |
kmplt | 0.003 | 0.000 | 0.004 | |
kmplt_svrl | 0.006 | 0.001 | 0.007 | |
logrnk | 0.003 | 0.001 | 0.004 | |
pltgamma | 0.002 | 0.001 | 0.003 | |
pltprior | 0.001 | 0.000 | 0.003 | |
simpson | 0.001 | 0.001 | 0.000 | |
survData | 0.001 | 0.001 | 0.003 | |
survivAURC | 0.144 | 0.009 | 0.154 | |
survivROC | 0.065 | 0.009 | 0.073 | |
trapezoid | 0.000 | 0.001 | 0.001 | |
weight_estimator_BLH | 0.001 | 0.000 | 0.000 | |
weight_estimator_BLH_noprior | 0.003 | 0.002 | 0.005 | |
weights_BLH | 0.007 | 0.004 | 0.010 | |
weights_xvBLH | 0.050 | 0.005 | 0.055 | |