Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:49 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the RBGL package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RBGL.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1507/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
RBGL 1.68.0 (landing page) Bioconductor Package Maintainer
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | WARNINGS | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: RBGL |
Version: 1.68.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:RBGL.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings RBGL_1.68.0.tar.gz |
StartedAt: 2021-10-14 22:52:29 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 22:53:24 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 55.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: RBGL.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:RBGL.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings RBGL_1.68.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.13-bioc/meat/RBGL.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘RBGL/DESCRIPTION’ ... OK * this is package ‘RBGL’ version ‘1.68.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .git_fetch_output.txt .git_merge_output.txt These were most likely included in error. See section ‘Package structure’ in the ‘Writing R Extensions’ manual. * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘RBGL’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE Package listed in more than one of Depends, Imports, Suggests, Enhances: ‘methods’ A package should be listed in only one of these fields. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... NOTE Note: information on .o files is not available File ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library/RBGL/libs/RBGL.so’: Found ‘_abort’, possibly from ‘abort’ (C) Compiled code should not call entry points which might terminate R nor write to stdout/stderr instead of to the console, nor use Fortran I/O nor system RNGs. The detected symbols are linked into the code but might come from libraries and not actually be called. See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual. * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘runTests.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See ‘/Users/biocbuild/bbs-3.13-bioc/meat/RBGL.Rcheck/00check.log’ for details.
RBGL.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL RBGL ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’ * installing *source* package ‘RBGL’ ... ** using staged installation ** libs clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c bbc.cpp -o bbc.o In file included from bbc.cpp:1: In file included from ./RBGL.hpp:38: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_list.hpp:255: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/detail/adjacency_list.hpp:37: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_iterator.hpp:13: /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/detail/iterator.hpp:13:1: warning: This header is deprecated. Use <iterator> instead. [-W#pragma-messages] BOOST_HEADER_DEPRECATED("<iterator>") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED' # define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) ^ <scratch space>:129:2: note: expanded from here message("This header is deprecated. Use " "<iterator>" " instead.") ^ 1 warning generated. clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c cliques.cpp -o cliques.o In file included from cliques.cpp:1: In file included from ./RBGL.hpp:38: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_list.hpp:255: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/detail/adjacency_list.hpp:37: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_iterator.hpp:13: /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/detail/iterator.hpp:13:1: warning: This header is deprecated. Use <iterator> instead. [-W#pragma-messages] BOOST_HEADER_DEPRECATED("<iterator>") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED' # define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) ^ <scratch space>:129:2: note: expanded from here message("This header is deprecated. Use " "<iterator>" " instead.") ^ 1 warning generated. clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c clusteringCoef.cpp -o clusteringCoef.o In file included from clusteringCoef.cpp:1: In file included from ./RBGL.hpp:38: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_list.hpp:255: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/detail/adjacency_list.hpp:37: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_iterator.hpp:13: /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/detail/iterator.hpp:13:1: warning: This header is deprecated. Use <iterator> instead. [-W#pragma-messages] BOOST_HEADER_DEPRECATED("<iterator>") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED' # define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) ^ <scratch space>:129:2: note: expanded from here message("This header is deprecated. Use " "<iterator>" " instead.") ^ 1 warning generated. clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c dominatorTree.cpp -o dominatorTree.o In file included from dominatorTree.cpp:1: In file included from ./RBGL.hpp:38: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_list.hpp:255: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/detail/adjacency_list.hpp:37: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_iterator.hpp:13: /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/detail/iterator.hpp:13:1: warning: This header is deprecated. Use <iterator> instead. [-W#pragma-messages] BOOST_HEADER_DEPRECATED("<iterator>") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED' # define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) ^ <scratch space>:129:2: note: expanded from here message("This header is deprecated. Use " "<iterator>" " instead.") ^ 1 warning generated. clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c edmonds_optimum_branching.cpp -o edmonds_optimum_branching.o In file included from edmonds_optimum_branching.cpp:1: In file included from ./RBGL.hpp:38: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_list.hpp:255: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/detail/adjacency_list.hpp:37: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_iterator.hpp:13: /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/detail/iterator.hpp:13:1: warning: This header is deprecated. Use <iterator> instead. [-W#pragma-messages] BOOST_HEADER_DEPRECATED("<iterator>") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED' # define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) ^ <scratch space>:129:2: note: expanded from here message("This header is deprecated. Use " "<iterator>" " instead.") ^ In file included from edmonds_optimum_branching.cpp:3: In file included from ./edmonds_optimum_branching.hpp:94: ./edmonds_optimum_branching_impl.hpp:520:71: warning: unused typedef 'EdgeIter' [-Wunused-local-typedef] typedef typename graph_traits<TEdgeListGraph>::edge_iterator EdgeIter; ^ ./edmonds_optimum_branching_impl.hpp:521:71: warning: unused typedef 'weight_t' [-Wunused-local-typedef] typedef typename property_traits<TWeightMap>::value_type weight_t; ^ 3 warnings generated. clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c hcs.cpp -o hcs.o In file included from hcs.cpp:1: In file included from ./RBGL.hpp:38: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_list.hpp:255: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/detail/adjacency_list.hpp:37: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_iterator.hpp:13: /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/detail/iterator.hpp:13:1: warning: This header is deprecated. Use <iterator> instead. [-W#pragma-messages] BOOST_HEADER_DEPRECATED("<iterator>") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED' # define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) ^ <scratch space>:129:2: note: expanded from here message("This header is deprecated. Use " "<iterator>" " instead.") ^ 1 warning generated. clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c incrConnComp.cpp -o incrConnComp.o In file included from incrConnComp.cpp:1: In file included from ./RBGL.hpp:38: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_list.hpp:255: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/detail/adjacency_list.hpp:37: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_iterator.hpp:13: /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/detail/iterator.hpp:13:1: warning: This header is deprecated. Use <iterator> instead. [-W#pragma-messages] BOOST_HEADER_DEPRECATED("<iterator>") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED' # define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) ^ <scratch space>:129:2: note: expanded from here message("This header is deprecated. Use " "<iterator>" " instead.") ^ incrConnComp.cpp:74:32: warning: unused variable 'child_index' [-Wunused-variable] BOOST_FOREACH(VertexIndex child_index, components[current_index]) { ^ 2 warnings generated. clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c interfaces.cpp -o interfaces.o In file included from interfaces.cpp:1: In file included from ./RBGL.hpp:38: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_list.hpp:255: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/detail/adjacency_list.hpp:37: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_iterator.hpp:13: /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/detail/iterator.hpp:13:1: warning: This header is deprecated. Use <iterator> instead. [-W#pragma-messages] BOOST_HEADER_DEPRECATED("<iterator>") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED' # define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) ^ <scratch space>:129:2: note: expanded from here message("This header is deprecated. Use " "<iterator>" " instead.") ^ interfaces.cpp:57:60: warning: unused typedef 'Edge' [-Wunused-local-typedef] typedef graph_traits < Graph_dd >::edge_descriptor Edge; ^ interfaces.cpp:61:62: warning: unused typedef 'Color' [-Wunused-local-typedef] typedef property_map<Graph_dd, vertex_color_t>::type Color; ^ interfaces.cpp:99:62: warning: unused typedef 'Vertex' [-Wunused-local-typedef] typedef graph_traits < Graph_dd >::vertex_descriptor Vertex; ^ interfaces.cpp:98:60: warning: unused typedef 'Edge' [-Wunused-local-typedef] typedef graph_traits < Graph_dd >::edge_descriptor Edge; ^ interfaces.cpp:143:62: warning: unused typedef 'Vertex' [-Wunused-local-typedef] typedef graph_traits < Graph_dd >::vertex_descriptor Vertex; ^ interfaces.cpp:142:60: warning: unused typedef 'Edge' [-Wunused-local-typedef] typedef graph_traits < Graph_dd >::edge_descriptor Edge; ^ interfaces.cpp:199:62: warning: unused typedef 'Vertex' [-Wunused-local-typedef] typedef graph_traits < Graph_ud >::vertex_descriptor Vertex; ^ interfaces.cpp:198:60: warning: unused typedef 'Edge' [-Wunused-local-typedef] typedef graph_traits < Graph_ud >::edge_descriptor Edge; ^ interfaces.cpp:225:60: warning: unused typedef 'Edge' [-Wunused-local-typedef] typedef graph_traits < Graph_dd >::edge_descriptor Edge; ^ interfaces.cpp:226:62: warning: unused typedef 'Vertex' [-Wunused-local-typedef] typedef graph_traits < Graph_dd >::vertex_descriptor Vertex; ^ interfaces.cpp:252:60: warning: unused typedef 'Edge' [-Wunused-local-typedef] typedef graph_traits < Graph_ud >::edge_descriptor Edge; ^ interfaces.cpp:253:62: warning: unused typedef 'Vertex' [-Wunused-local-typedef] typedef graph_traits < Graph_ud >::vertex_descriptor Vertex; ^ interfaces.cpp:295:60: warning: unused typedef 'Edge' [-Wunused-local-typedef] typedef graph_traits < Graph_ud >::edge_descriptor Edge; ^ interfaces.cpp:320:62: warning: unused typedef 'Vertex' [-Wunused-local-typedef] typedef graph_traits < Graph_ud >::vertex_descriptor Vertex; ^ interfaces.cpp:360:60: warning: unused typedef 'Edge' [-Wunused-local-typedef] typedef graph_traits < Graph_ud >::edge_descriptor Edge; ^ interfaces.cpp:361:62: warning: unused typedef 'Vertex' [-Wunused-local-typedef] typedef graph_traits < Graph_ud >::vertex_descriptor Vertex; ^ 17 warnings generated. clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c minST.cpp -o minST.o In file included from minST.cpp:1: In file included from ./RBGL.hpp:38: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_list.hpp:255: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/detail/adjacency_list.hpp:37: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_iterator.hpp:13: /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/detail/iterator.hpp:13:1: warning: This header is deprecated. Use <iterator> instead. [-W#pragma-messages] BOOST_HEADER_DEPRECATED("<iterator>") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED' # define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) ^ <scratch space>:129:2: note: expanded from here message("This header is deprecated. Use " "<iterator>" " instead.") ^ minST.cpp:14:62: warning: unused typedef 'Vertex' [-Wunused-local-typedef] typedef graph_traits < Graph_dd >::vertex_descriptor Vertex; ^ minST.cpp:48:62: warning: unused typedef 'Vertex' [-Wunused-local-typedef] typedef graph_traits < Graph_ud >::vertex_descriptor Vertex; ^ minST.cpp:81:60: warning: unused typedef 'Edge' [-Wunused-local-typedef] typedef graph_traits < Graph_ud >::edge_descriptor Edge; ^ 4 warnings generated. clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c mincut.cpp -o mincut.o In file included from mincut.cpp:1: In file included from ./RBGL.hpp:38: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_list.hpp:255: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/detail/adjacency_list.hpp:37: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_iterator.hpp:13: /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/detail/iterator.hpp:13:1: warning: This header is deprecated. Use <iterator> instead. [-W#pragma-messages] BOOST_HEADER_DEPRECATED("<iterator>") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED' # define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) ^ <scratch space>:129:2: note: expanded from here message("This header is deprecated. Use " "<iterator>" " instead.") ^ 1 warning generated. clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c ordering.cpp -o ordering.o In file included from ordering.cpp:1: In file included from ./RBGL.hpp:38: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_list.hpp:255: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/detail/adjacency_list.hpp:37: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_iterator.hpp:13: /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/detail/iterator.hpp:13:1: warning: This header is deprecated. Use <iterator> instead. [-W#pragma-messages] BOOST_HEADER_DEPRECATED("<iterator>") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED' # define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) ^ <scratch space>:129:2: note: expanded from here message("This header is deprecated. Use " "<iterator>" " instead.") ^ In file included from ordering.cpp:3: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/cuthill_mckee_ordering.hpp:15: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/detail/sparse_ordering.hpp:24: /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/bind.hpp:36:1: warning: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior. [-W#pragma-messages] BOOST_PRAGMA_MESSAGE( ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) ^ <scratch space>:112:2: note: expanded from here message("The practice of declaring the Bind placeholders (_1, _2, ...) " "in the global namespace is deprecated. Please use " "<boost/bind/bind.hpp> + using namespace boost::placeholders, " "or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.") ^ ordering.cpp:182:48: warning: unused variable 'id' [-Wunused-variable] property_map<Graph_dd, vertex_index_t>::type id = get(vertex_index, g); ^ ordering.cpp:133:53: warning: unused typedef 'Vertex' [-Wunused-local-typedef] typedef graph_traits<Graph_dd>::vertex_descriptor Vertex; ^ ordering.cpp:176:53: warning: unused typedef 'Vertex' [-Wunused-local-typedef] typedef graph_traits<Graph_dd>::vertex_descriptor Vertex; ^ ordering.cpp:232:47: warning: unused typedef 'Pair' [-Wunused-local-typedef] typedef std::pair<std::size_t, std::size_t> Pair; ^ 6 warnings generated. clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c planar.cpp -o planar.o In file included from planar.cpp:1: In file included from ./RBGL.hpp:38: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_list.hpp:255: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/detail/adjacency_list.hpp:37: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_iterator.hpp:13: /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/detail/iterator.hpp:13:1: warning: This header is deprecated. Use <iterator> instead. [-W#pragma-messages] BOOST_HEADER_DEPRECATED("<iterator>") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED' # define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) ^ <scratch space>:129:2: note: expanded from here message("This header is deprecated. Use " "<iterator>" " instead.") ^ planar.cpp:225:30: warning: unused variable 'oi' [-Wunused-variable] Vertex_Vec_t::iterator oi, oi_end = ordering.end(); ^ planar.cpp:225:34: warning: unused variable 'oi_end' [-Wunused-variable] Vertex_Vec_t::iterator oi, oi_end = ordering.end(); ^ planar.cpp:429:32: warning: unused variable 'ki' [-Wunused-variable] Edge_Vec_t::iterator ki, ki_end = kuratowski_edges.end(); ^ planar.cpp:429:36: warning: unused variable 'ki_end' [-Wunused-variable] Edge_Vec_t::iterator ki, ki_end = kuratowski_edges.end(); ^ planar.cpp:461:6: warning: unused variable 'i' [-Wunused-variable] int i, j = 0; ^ 6 warnings generated. clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c registerSigHandlers.cpp -o registerSigHandlers.o In file included from registerSigHandlers.cpp:1: In file included from ./RBGL.hpp:38: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_list.hpp:255: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/detail/adjacency_list.hpp:37: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_iterator.hpp:13: /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/detail/iterator.hpp:13:1: warning: This header is deprecated. Use <iterator> instead. [-W#pragma-messages] BOOST_HEADER_DEPRECATED("<iterator>") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED' # define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) ^ <scratch space>:129:2: note: expanded from here message("This header is deprecated. Use " "<iterator>" " instead.") ^ 1 warning generated. clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c shortestPath.cpp -o shortestPath.o In file included from shortestPath.cpp:1: In file included from ./RBGL.hpp:38: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_list.hpp:255: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/detail/adjacency_list.hpp:37: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_iterator.hpp:13: /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/detail/iterator.hpp:13:1: warning: This header is deprecated. Use <iterator> instead. [-W#pragma-messages] BOOST_HEADER_DEPRECATED("<iterator>") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED' # define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) ^ <scratch space>:129:2: note: expanded from here message("This header is deprecated. Use " "<iterator>" " instead.") ^ shortestPath.cpp:17:60: warning: unused typedef 'Edge' [-Wunused-local-typedef] typedef graph_traits < Graph_dd >::edge_descriptor Edge; ^ shortestPath.cpp:136:60: warning: unused typedef 'Edge' [-Wunused-local-typedef] typedef graph_traits < Graph_dd >::edge_descriptor Edge; ^ shortestPath.cpp:180:39: warning: unused typedef 'Edge' [-Wunused-local-typedef] typedef std::pair < int, int >Edge; ^ shortestPath.cpp:177:81: warning: unused typedef 'Graph' [-Wunused-local-typedef] property< edge_weight_t, double, property< edge_weight2_t, double > > > Graph; ^ 5 warnings generated. clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c sna.cpp -o sna.o In file included from sna.cpp:1: In file included from ./RBGL.hpp:38: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_list.hpp:255: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/detail/adjacency_list.hpp:37: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_iterator.hpp:13: /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/detail/iterator.hpp:13:1: warning: This header is deprecated. Use <iterator> instead. [-W#pragma-messages] BOOST_HEADER_DEPRECATED("<iterator>") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED' # define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) ^ <scratch space>:129:2: note: expanded from here message("This header is deprecated. Use " "<iterator>" " instead.") ^ sna.cpp:161:9: warning: unused variable 'res_cap' [-Wunused-variable] res_cap = get(edge_residual_capacity, flow_g); ^ 2 warnings generated. clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c transitive_closure.cpp -o transitive_closure.o In file included from transitive_closure.cpp:16: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/transitive_closure.hpp:16: /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/bind.hpp:36:1: warning: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior. [-W#pragma-messages] BOOST_PRAGMA_MESSAGE( ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) ^ <scratch space>:419:2: note: expanded from here message("The practice of declaring the Bind placeholders (_1, _2, ...) " "in the global namespace is deprecated. Please use " "<boost/bind/bind.hpp> + using namespace boost::placeholders, " "or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.") ^ In file included from transitive_closure.cpp:16: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/transitive_closure.hpp:17: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/strong_components.hpp:267: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/transpose_graph.hpp:16: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/reverse_graph.hpp:9: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_iterator.hpp:13: /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/detail/iterator.hpp:13:1: warning: This header is deprecated. Use <iterator> instead. [-W#pragma-messages] BOOST_HEADER_DEPRECATED("<iterator>") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED' # define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) ^ <scratch space>:175:2: note: expanded from here message("This header is deprecated. Use " "<iterator>" " instead.") ^ 2 warnings generated. clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c wavefront.cpp -o wavefront.o In file included from wavefront.cpp:1: In file included from ./RBGL.hpp:38: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_list.hpp:255: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/detail/adjacency_list.hpp:37: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/graph/adjacency_iterator.hpp:13: /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/detail/iterator.hpp:13:1: warning: This header is deprecated. Use <iterator> instead. [-W#pragma-messages] BOOST_HEADER_DEPRECATED("<iterator>") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED' # define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.") ^ /Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) ^ <scratch space>:129:2: note: expanded from here message("This header is deprecated. Use " "<iterator>" " instead.") ^ 1 warning generated. clang++ -mmacosx-version-min=10.13 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o RBGL.so bbc.o cliques.o clusteringCoef.o dominatorTree.o edmonds_optimum_branching.o hcs.o incrConnComp.o interfaces.o minST.o mincut.o ordering.o planar.o registerSigHandlers.o shortestPath.o sna.o transitive_closure.o wavefront.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Library/Frameworks/R.framework/Versions/4.1/Resources/library/00LOCK-RBGL/00new/RBGL/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ‘RBGL.Rnw’ ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RBGL)
RBGL.Rcheck/tests/runTests.Rout
R version 4.1.1 (2021-08-10) -- "Kick Things" Copyright (C) 2021 The R Foundation for Statistical Computing Platform: x86_64-apple-darwin17.0 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > BiocGenerics:::testPackage("RBGL") Attaching package: 'BiocGenerics' The following objects are masked from 'package:parallel': clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, clusterExport, clusterMap, parApply, parCapply, parLapply, parLapplyLB, parRapply, parSapply, parSapplyLB The following objects are masked from 'package:stats': IQR, mad, sd, var, xtabs The following objects are masked from 'package:base': Filter, Find, Map, Position, Reduce, anyDuplicated, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table, tapply, union, unique, unsplit, which.max, which.min RUNIT TEST PROTOCOL -- Thu Oct 14 22:53:10 2021 *********************************************** Number of test functions: 1 Number of errors: 0 Number of failures: 0 1 Test Suite : RBGL RUnit Tests - 1 test function, 0 errors, 0 failures Number of test functions: 1 Number of errors: 0 Number of failures: 0 > > proc.time() user system elapsed 0.952 0.097 1.027
RBGL.Rcheck/RBGL-Ex.timings
name | user | system | elapsed | |
FileDep | 0.522 | 0.035 | 0.560 | |
astarSearch | 0.092 | 0.002 | 0.093 | |
bandwidth | 0.014 | 0.001 | 0.015 | |
bellman.ford.sp | 0.064 | 0.002 | 0.066 | |
bfs | 0.017 | 0.002 | 0.019 | |
biConnComp | 0.006 | 0.001 | 0.008 | |
boyerMyrvoldPlanarityTest | 0.007 | 0.000 | 0.008 | |
chrobakPayneStraightLineDrawing | 0.056 | 0.002 | 0.059 | |
clusteringCoef | 0.008 | 0.001 | 0.009 | |
clusteringCoefAppr | 0.009 | 0.001 | 0.010 | |
coloring | 0.007 | 0.001 | 0.007 | |
connectedComp | 0.013 | 0.002 | 0.015 | |
dag.sp | 0.009 | 0.002 | 0.011 | |
dijkstra.sp | 0.025 | 0.004 | 0.029 | |
dominatorTree | 0.007 | 0.001 | 0.008 | |
edgeConn | 0.006 | 0.000 | 0.006 | |
edmondsMaxCardinalityMatching | 0.013 | 0.002 | 0.014 | |
edmondsOptimumBranching | 0.008 | 0.001 | 0.009 | |
extractPath | 0.004 | 0.002 | 0.006 | |
floyd.warshall.all.pairs.sp | 0.008 | 0.002 | 0.010 | |
gprofile | 0.005 | 0.001 | 0.006 | |
graphGenerator | 0.001 | 0.001 | 0.001 | |
highlyConnSG | 0.011 | 0.001 | 0.012 | |
incrConnComp | 0.008 | 0.001 | 0.009 | |
is.triangulated | 0.012 | 0.001 | 0.014 | |
isKuratowskiSubgraph | 0.011 | 0.001 | 0.012 | |
isStraightLineDrawing | 0.007 | 0.001 | 0.008 | |
isomorphism | 0.008 | 0.001 | 0.008 | |
johnson.all.pairs.sp | 0.008 | 0.001 | 0.009 | |
kCliques | 0.005 | 0.001 | 0.006 | |
kCores | 0.037 | 0.002 | 0.039 | |
lambdaSets | 0.006 | 0.001 | 0.008 | |
layout | 0.000 | 0.001 | 0.001 | |
makeBiconnectedPlanar | 0.013 | 0.001 | 0.013 | |
makeConnected | 0.008 | 0.001 | 0.009 | |
makeMaximalPlanar | 0.010 | 0.001 | 0.011 | |
maxClique | 0.011 | 0.002 | 0.012 | |
maxFlow | 0.014 | 0.001 | 0.015 | |
minCut | 0.004 | 0.000 | 0.005 | |
mstree.kruskal | 0.017 | 0.001 | 0.019 | |
mstree.prim | 0.008 | 0.001 | 0.010 | |
ordering | 0.012 | 0.001 | 0.013 | |
planarCanonicalOrdering | 0.008 | 0.001 | 0.008 | |
planarFaceTraversal | 0.008 | 0.002 | 0.010 | |
removeSelfLoops | 0.009 | 0.001 | 0.009 | |
separates | 0.012 | 0.001 | 0.013 | |
sp.between | 0.022 | 0.003 | 0.025 | |
strongComp | 0.012 | 0.001 | 0.013 | |
transClosure | 0.006 | 0.000 | 0.006 | |
transitivity | 0.004 | 0.000 | 0.005 | |
tsort | 0.004 | 0.002 | 0.005 | |
wavefront | 0.006 | 0.001 | 0.007 | |