Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:48 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the QSutils package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/QSutils.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1478/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
QSutils 1.10.0 (landing page) Mercedes Guerrero-Murillo
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: QSutils |
Version: 1.10.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:QSutils.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings QSutils_1.10.0.tar.gz |
StartedAt: 2021-10-14 22:45:07 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 22:46:53 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 106.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: QSutils.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:QSutils.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings QSutils_1.10.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.13-bioc/meat/QSutils.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘QSutils/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘QSutils’ version ‘1.10.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .git_fetch_output.txt .git_merge_output.txt These were most likely included in error. See section ‘Package structure’ in the ‘Writing R Extensions’ manual. * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘QSutils’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.13-bioc/meat/QSutils.Rcheck/00check.log’ for details.
QSutils.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL QSutils ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’ * installing *source* package ‘QSutils’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (QSutils)
QSutils.Rcheck/QSutils-Ex.timings
name | user | system | elapsed | |
Collapse | 0.152 | 0.015 | 0.169 | |
ConsSeq | 0.037 | 0.005 | 0.042 | |
CorrectGapsAndNs | 0.007 | 0.002 | 0.008 | |
DBrule | 0.061 | 0.007 | 0.067 | |
DNA.dist | 0.009 | 0.002 | 0.010 | |
DSFT | 0.008 | 0.002 | 0.009 | |
Diverge | 0.004 | 0.000 | 0.005 | |
DottedAlignment | 0.012 | 0.002 | 0.013 | |
FAD | 0.008 | 0.001 | 0.009 | |
FreqMat | 0.026 | 0.007 | 0.034 | |
GenerateVars | 0.004 | 0.001 | 0.006 | |
GenotypeStandards_A-H.fas | 0.008 | 0.001 | 0.010 | |
GetInfProfile | 0.033 | 0.007 | 0.041 | |
GetQSData | 0.450 | 0.055 | 0.504 | |
GetRandomSeq | 0.000 | 0.001 | 0.001 | |
GiniSimpson | 0.001 | 0.001 | 0.002 | |
HCq | 0.008 | 0.002 | 0.010 | |
Hill | 0.005 | 0.002 | 0.006 | |
IntersectStrandHpls | 0.103 | 0.004 | 0.143 | |
MutationFreq | 0.406 | 0.045 | 0.451 | |
MutsTbl | 0.022 | 0.005 | 0.028 | |
NucleotideDiversity | 0.012 | 0.001 | 0.012 | |
PolyDist | 0.039 | 0.001 | 0.040 | |
Rao | 0.016 | 0.002 | 0.018 | |
ReadAmplSeqs | 0.033 | 0.002 | 0.035 | |
Renyi | 0.004 | 0.001 | 0.005 | |
ReportVariants | 0.027 | 0.001 | 0.028 | |
SegSites | 0.014 | 0.001 | 0.016 | |
Shannon | 0.002 | 0.000 | 0.002 | |
SortByMutations | 0.590 | 0.036 | 0.627 | |
SummaryMuts | 0.020 | 0.001 | 0.021 | |
TotalMutations | 0.018 | 0.000 | 0.020 | |
Toy.GapsAndNs.fna | 0.052 | 0.002 | 0.054 | |
ToyData_10_50_1000.fna | 0.025 | 0.001 | 0.027 | |
ToyData_FWReads.fna | 0.086 | 0.003 | 0.089 | |
ToyData_RVReads.fna | 0.088 | 0.010 | 0.097 | |
UniqueMutations | 0.014 | 0.001 | 0.014 | |
Unknown-Genotype.fna | 0.015 | 0.000 | 0.015 | |
fn.ab | 0.005 | 0.002 | 0.007 | |
geom.series | 0.004 | 0.001 | 0.004 | |