Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:05:49 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the ProteoMM package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ProteoMM.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1451/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
ProteoMM 1.10.0 (landing page) Yuliya V Karpievitch
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: ProteoMM |
Version: 1.10.0 |
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:ProteoMM.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings ProteoMM_1.10.0.tar.gz |
StartedAt: 2021-10-14 11:08:18 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 11:09:54 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 96.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: ProteoMM.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:ProteoMM.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings ProteoMM_1.10.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.13-bioc/meat/ProteoMM.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘ProteoMM/DESCRIPTION’ ... OK * this is package ‘ProteoMM’ version ‘1.10.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘ProteoMM’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE License components which are templates and need '+ file LICENSE': MIT * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed prot_level_multi_part 18.139 0.024 18.163 prot_level_multiMat_PresAbs 6.043 0.032 6.076 subset_proteins 6.027 0.015 6.043 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.13-bioc/meat/ProteoMM.Rcheck/00check.log’ for details.
ProteoMM.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL ProteoMM ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’ * installing *source* package ‘ProteoMM’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ProteoMM)
ProteoMM.Rcheck/ProteoMM-Ex.timings
name | user | system | elapsed | |
MBimpute | 3.549 | 0.004 | 3.554 | |
convert_log2 | 0.005 | 0.000 | 0.006 | |
eig_norm1 | 2.709 | 0.000 | 2.708 | |
eig_norm2 | 2.7 | 0.0 | 2.7 | |
eigen_pi | 0.018 | 0.004 | 0.021 | |
g.test | 0.004 | 0.000 | 0.004 | |
get_presAbs_prots | 4.557 | 0.008 | 4.566 | |
makeLMFormula | 0.000 | 0.000 | 0.001 | |
make_intencities | 0.005 | 0.000 | 0.005 | |
make_meta | 0.005 | 0.001 | 0.005 | |
peptideLevel_DE | 3.764 | 0.011 | 3.775 | |
peptideLevel_PresAbsDE | 4.546 | 0.008 | 4.554 | |
plot_3_pep_trends_NOfile | 2.610 | 0.003 | 2.613 | |
plot_volcano | 3.722 | 0.012 | 3.734 | |
plot_volcano_wLab | 3.829 | 0.008 | 3.837 | |
prot_level_multiMat_PresAbs | 6.043 | 0.032 | 6.076 | |
prot_level_multi_part | 18.139 | 0.024 | 18.163 | |
subset_proteins | 6.027 | 0.015 | 6.043 | |