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This page was generated on 2021-10-15 15:06:47 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the PrecisionTrialDrawer package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/PrecisionTrialDrawer.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1426/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
PrecisionTrialDrawer 1.8.0 (landing page) Giorgio Melloni
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: PrecisionTrialDrawer |
Version: 1.8.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:PrecisionTrialDrawer.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings PrecisionTrialDrawer_1.8.0.tar.gz |
StartedAt: 2021-10-14 22:29:36 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 22:33:33 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 237.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: PrecisionTrialDrawer.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:PrecisionTrialDrawer.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings PrecisionTrialDrawer_1.8.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.13-bioc/meat/PrecisionTrialDrawer.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘PrecisionTrialDrawer/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘PrecisionTrialDrawer’ version ‘1.8.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .git_fetch_output.txt .git_merge_output.txt These were most likely included in error. See section ‘Package structure’ in the ‘Writing R Extensions’ manual. * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘PrecisionTrialDrawer’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed newCancerPanel 7.095 0.119 11.503 panelDesigner 7.077 0.087 10.665 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.13-bioc/meat/PrecisionTrialDrawer.Rcheck/00check.log’ for details.
PrecisionTrialDrawer.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL PrecisionTrialDrawer ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’ * installing *source* package ‘PrecisionTrialDrawer’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for ‘toJSON’ from package ‘jsonlite’ in package ‘googleVis’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Creating a generic function for ‘toJSON’ from package ‘jsonlite’ in package ‘googleVis’ ** testing if installed package can be loaded from final location Creating a generic function for ‘toJSON’ from package ‘jsonlite’ in package ‘googleVis’ ** testing if installed package keeps a record of temporary installation path * DONE (PrecisionTrialDrawer)
PrecisionTrialDrawer.Rcheck/PrecisionTrialDrawer-Ex.timings
name | user | system | elapsed | |
CancerPanel-class | 0.002 | 0.001 | 0.003 | |
PrecisionTrialDrawer-package | 0.341 | 0.008 | 0.349 | |
appendRepo | 0.938 | 0.020 | 0.958 | |
coocMutexPlot | 1.771 | 0.060 | 1.832 | |
coveragePlot | 0.247 | 0.011 | 0.259 | |
coverageStackPlot | 0.305 | 0.007 | 0.313 | |
cpArguments | 0.020 | 0.003 | 0.024 | |
cpData | 0.018 | 0.002 | 0.020 | |
cpDataSubset | 0.010 | 0.001 | 0.012 | |
cpDesign | 0.029 | 0.004 | 0.033 | |
cpFreq | 0.324 | 0.052 | 0.377 | |
cpObj | 0.258 | 0.011 | 0.270 | |
cpObj2 | 0.045 | 0.005 | 0.051 | |
dataExtractor | 0.464 | 0.003 | 0.468 | |
filterFusions | 0.461 | 0.015 | 0.477 | |
filterMutations | 1.388 | 0.016 | 1.404 | |
getAlterations | 0.244 | 0.008 | 0.705 | |
newCancerPanel | 7.095 | 0.119 | 11.503 | |
panelDesigner | 7.077 | 0.087 | 10.665 | |
panelOptimizer | 0.001 | 0.001 | 0.002 | |
panelexample | 0.006 | 0.002 | 0.009 | |
propPowerSampleSize | 0.961 | 0.015 | 0.977 | |
saturationPlot | 2.140 | 0.071 | 2.214 | |
showCancerStudy | 0.019 | 0.001 | 0.062 | |
showTumorType | 0.053 | 0.002 | 0.099 | |
subsetAlterations | 0.725 | 0.024 | 0.750 | |
survPowerSampleSize | 0.682 | 0.008 | 0.691 | |
survPowerSampleSize1Arm | 0.721 | 0.006 | 0.730 | |