| Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:16 -0400 (Fri, 15 Oct 2021).
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To the developers/maintainers of the PhenStat package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/PhenStat.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1383/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| PhenStat 2.28.0 (landing page) Hamed Haselimashhadi
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: PhenStat |
| Version: 2.28.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/PhenStat_2.28.0.tar.gz && rm -rf PhenStat.buildbin-libdir && mkdir PhenStat.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PhenStat.buildbin-libdir PhenStat_2.28.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL PhenStat_2.28.0.zip && rm PhenStat_2.28.0.tar.gz PhenStat_2.28.0.zip |
| StartedAt: 2021-10-14 10:10:11 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 10:11:17 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 65.9 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/PhenStat_2.28.0.tar.gz && rm -rf PhenStat.buildbin-libdir && mkdir PhenStat.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PhenStat.buildbin-libdir PhenStat_2.28.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL PhenStat_2.28.0.zip && rm PhenStat_2.28.0.tar.gz PhenStat_2.28.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
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0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
25 733k 25 185k 0 0 561k 0 0:00:01 --:--:-- 0:00:01 561k
100 733k 100 733k 0 0 945k 0 --:--:-- --:--:-- --:--:-- 944k
install for i386
* installing *source* package 'PhenStat' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'PhenStat'
finding HTML links ... done
FisherExactTest html
JSONOutput html
LRDataset html
LargeDataObject-class html
PhenList-class html
PhenList html
PhenStatReport html
PhenTestResult-class html
PhenTestResult html
RRTest html
TFDataset html
analysedDataset html
analysedDatasetPhenList html
analysedSubset html
analysisResults html
batchIn html
boxplotResidualBatch html
boxplotSexGenotype html
boxplotSexGenotypeBatch html
boxplotSexGenotypeBatchAdjusted html
boxplotSexGenotypeResult html
boxplotSexGenotypeWeightBatchAdjusted html
categoricalBarplot html
checkDataset html
classificationTag html
columnChecks html
columnLevels html
comparison html
dataset html
determiningLambda html
dim html
finalLRModel html
finalModel html
finalTFModel html
formulaDeterminingLambda html
generateGraphs html
getColumn html
getColumnBatchAdjusted html
getColumnView html
getColumnWeightBatchAdjusted html
getCountMatrices html
getDataset html
getGenotypeEffect html
getMatrix html
getPercentageMatrix html
getStat html
getVariable html
getVariables html
hemiGenotype html
htest-class html
htestPhenStat-class html
matrixCount html
method html
methodText html
modelFormula html
modelFormulaLR html
multipleBatches html
noSexes html
parameters html
parserOutputSummary html
parserOutputSummaryLR html
parserOutputTFSummary html
performReverseTransformation html
performTransformation html
plot.PhenList html
plot.PhenTestResult html
plotResidualPredicted html
printLROutput html
printTabStyle html
pvalue html
qqplotGenotype html
qqplotRandomEffects html
qqplotRotatedResiduals html
recommendMethod html
refGenotype html
scatterplotGenotypeWeight html
scatterplotGenotypeWeightResult html
scatterplotSexGenotypeBatch html
scatterplotSexGenotypeBatchResult html
setBatch html
setGenotype html
setMissingValue html
setSex html
setWeight html
startLRModel html
startModel html
startTFModel html
subsetText html
summaryOutput html
summaryPhenListResult html
testDataset html
testFinalLRModel html
testFinalModel html
testGenotype html
transformation html
transformationJSON html
transformationText html
vectorOutput html
vectorOutputMatrices html
weightIn html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'PhenStat' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'PhenStat' as PhenStat_2.28.0.zip
* DONE (PhenStat)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'PhenStat' successfully unpacked and MD5 sums checked