| Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:15 -0400 (Fri, 15 Oct 2021).
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To the developers/maintainers of the PharmacoGx package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/PharmacoGx.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1378/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| PharmacoGx 2.4.0 (landing page) Benjamin Haibe-Kains
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: PharmacoGx |
| Version: 2.4.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/PharmacoGx_2.4.0.tar.gz && rm -rf PharmacoGx.buildbin-libdir && mkdir PharmacoGx.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PharmacoGx.buildbin-libdir PharmacoGx_2.4.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL PharmacoGx_2.4.0.zip && rm PharmacoGx_2.4.0.tar.gz PharmacoGx_2.4.0.zip |
| StartedAt: 2021-10-14 09:33:27 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 09:35:11 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 103.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/PharmacoGx_2.4.0.tar.gz && rm -rf PharmacoGx.buildbin-libdir && mkdir PharmacoGx.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PharmacoGx.buildbin-libdir PharmacoGx_2.4.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL PharmacoGx_2.4.0.zip && rm PharmacoGx_2.4.0.tar.gz PharmacoGx_2.4.0.zip
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install for i386
* installing *source* package 'PharmacoGx' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'PharmacoGx'
finding HTML links ... done
CCLEsmall html
CMAPsmall html
GDSCsmall html
HDAC_genes html
PharmacoSet-accessors html
PharmacoSet-class html
PharmacoSet html
PharmacoSig html
amcc html
availablePSets html
callingWaterfall html
checkPsetStructure html
computeABC html
computeAUC html
computeAmax html
computeICn html
computeSlope html
connectivityScore html
cosinePerm html
dim-PharmacoSet-method html
dot-summarizeSensProfiles html
downloadPSet html
downloadPertSig html
drugDoseResponseCurve html
drugInfo-set html
drugInfo html
drugNames-set html
drugNames html
drugPerturbationSig html
drugSensitivitySig-PharmacoSet-method html
filterNoisyCurves html
geneDrugSensitivity html
gwc html
intersectPSet html
logLogisticRegression html
mcc html
plot.PharmacoSig html
show-PharmacoSet-method html
show-PharmacoSig-method html
showSigAnnot-PharmacoSig-method html
sub-PharmacoSet-ANY-ANY-ANY-method html
subsetTo-PharmacoSet-method html
summarizeMolecularProfiles-PharmacoSet-method
html
summarizeSensitivityProfiles-PharmacoSet-method
html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'PharmacoGx' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'PharmacoGx' as PharmacoGx_2.4.0.zip
* DONE (PharmacoGx)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'PharmacoGx' successfully unpacked and MD5 sums checked